Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo04g00496 ATGCAGAGAATTCCAGACAATTTCGTGAGGAAGATTCGAGATGAGCTTTCTGCAGTTGCTACTCTTGCTGTTCCGGTTGGTCATGTATGGCATGTAGGACTAAGAAAAGCAGATAACAAGTTTTGGTTTAGAGAAGGGTGGCAGGAATTTGTTGACCATTATGCGATACGTGTGGGTTACTTTTTGCTATTCAAATACGAAGGGAATTCTTCTTTTGTTGTTTACATATTCAATCTAAGTACGTCTGAAATTAATTATCAATCTGCCAATCTCAGTAATAGTCAAGCATTCAAGTATTGCAATCAAAATGCTGTATTTGAAGAAATCGAAGATGATGACTCAGGTGACTTTGCGGGTTCTTCACTTCCGAGCTTGATATCTGAAAGAAACAAAGCGTTTAGCGAAGGATCAGATCAACTGAGATCTCCCAAAATTTTTAGTCCTCCGGCACTGCAGAATTTGTTTAATGGATCAAAACTGAATTGTGTAAATTGGTCTAACGAAGGCAGCATGCATCCATCAAAAGGGGGCGATGAAATTTCATTAATGGTAGATGAGCAGGGACCATCCACTCAAAATGAGGAGGAAGTTGAAATGCGATATAGGTTTTATGAAAGTGCTTCCGCCAGAAAGCGGACTGTGACCGCCGAAGAAAGAGAAAGGGTCGTCAACGCATCCAAAGCTTTTGAGCCTATTAATCCCTTCTGTCGAGTTGTTTTGCGACCATCCTATCTATATCGAGGCTGTATAATGTACTTGCCATCTTGCTTTGCCGAAAAGAATCTAAGTGGGGTTTCGGGATTCATCAAACTTCAGATTTCTGATGGACGACAGTGGTCCGTCAGATGTCTCAACAAAGGCGGCAAAACTAAGTTTAGCCAAGGTTGGTATGAATTTTGCTTGGAGAATAATTTAGGAGAAGGAGATGTTTGTGTGTTTGAGTTGATCAAGGCCAGAGAAATTGTGCTTAAAGTTACCATGTTTCGTGTCATGGAAGACGCCAGATACGCTAACCCAACCCAGTTGCAGAGCTACGGCCATAGTAAGCTGGCAAAAATGGCGACAGCCTCTGCAGCATTCTCTCCGGCCATGGCTGCCGCTTCTTCGGTTACAGCACCAAGAAAACAGAAAAAAACCAACACCCACTACATCGCAGGACTGAATTCATTTAGTGGACTAAAAGCACGCACCCAAGTGGCCTCAACGGGGGTTCCTGTGTGTACCCAGCAGTCATTTGCAAAGGTAGTGAGCTCTCTCAAAGGAAAAGGGAGAAGTGGCGGTGGGGCACTTTCTTCTACCTGTAACACTGCCGGTGAAATATTCCAGGTTGCAGCCATTATCAATGGGCTTGTTCTTGTTGGAGTGGCTGTGGGTTTTGTTCTGCTTCGAATTGAAGCGGCTGTCGAGGAGGCTGACTGA 1419 43.83 MQRIPDNFVRKIRDELSAVATLAVPVGHVWHVGLRKADNKFWFREGWQEFVDHYAIRVGYFLLFKYEGNSSFVVYIFNLSTSEINYQSANLSNSQAFKYCNQNAVFEEIEDDDSGDFAGSSLPSLISERNKAFSEGSDQLRSPKIFSPPALQNLFNGSKLNCVNWSNEGSMHPSKGGDEISLMVDEQGPSTQNEEEVEMRYRFYESASARKRTVTAEERERVVNASKAFEPINPFCRVVLRPSYLYRGCIMYLPSCFAEKNLSGVSGFIKLQISDGRQWSVRCLNKGGKTKFSQGWYEFCLENNLGEGDVCVFELIKAREIVLKVTMFRVMEDARYANPTQLQSYGHSKLAKMATASAAFSPAMAAASSVTAPRKQKKTNTHYIAGLNSFSGLKARTQVASTGVPVCTQQSFAKVVSSLKGKGRSGGGALSSTCNTAGEIFQVAAIINGLVLVGVAVGFVLLRIEAAVEEAD 472
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 4134274 4136817 + BLOR13408 Blo04g00496 59524
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Blo04g00496 472 Pfam PetM family of cytochrome b6f complex subunit 7 438 465 IPR012595 GO:0009512
Blo04g00496 472 Gene3D - 1 81 IPR015300 -
Blo04g00496 472 PANTHER B3 DOMAIN TRANSCRIPTION FACTOR VRN1-LIKE PROTEIN 3 161 - -
Blo04g00496 472 CDD B3_DNA 3 78 IPR003340 GO:0003677
Blo04g00496 472 SMART B3_2 1 80 IPR003340 GO:0003677
Blo04g00496 472 SMART B3_2 236 331 IPR003340 GO:0003677
Blo04g00496 472 Gene3D - 213 333 IPR015300 -
Blo04g00496 472 SUPERFAMILY DNA-binding pseudobarrel domain 231 332 IPR015300 -
Blo04g00496 472 ProSiteProfiles B3 DNA-binding domain profile. 1 80 IPR003340 GO:0003677
Blo04g00496 472 PANTHER B3 DOMAIN-CONTAINING 3 161 - -
Blo04g00496 472 PANTHER B3 DOMAIN-CONTAINING 190 355 - -
Blo04g00496 472 CDD B3_DNA 234 329 IPR003340 GO:0003677
Blo04g00496 472 ProSiteProfiles B3 DNA-binding domain profile. 236 331 IPR003340 GO:0003677
Blo04g00496 472 Hamap Cytochrome b6-f complex subunit 7 [petM]. 436 468 IPR012595 GO:0009512
Blo04g00496 472 SUPERFAMILY DNA-binding pseudobarrel domain 3 79 IPR015300 -
Blo04g00496 472 PANTHER B3 DOMAIN TRANSCRIPTION FACTOR VRN1-LIKE PROTEIN 190 355 - -
Blo04g00496 472 SUPERFAMILY PetM subunit of the cytochrome b6f complex 437 469 - -
Blo04g00496 472 Pfam B3 DNA binding domain 239 329 IPR003340 GO:0003677
Blo04g00496 472 Pfam B3 DNA binding domain 3 78 IPR003340 GO:0003677
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Blo04g00496 Blo13g00560 BCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo04g00496 Blo-Chr4:4134274 Blo05g00223 Blo-Chr5:2469055 1.06E-06 dispersed
Blo12g00952 Blo-Chr12:27647877 Blo04g00496 Blo-Chr4:4134274 9.97E-06 dispersed
Blo05g00588 Blo-Chr5:14876478 Blo04g00496 Blo-Chr4:4134274 2.71E-33 transposed
Blo13g00560 Blo-Chr13:27599842 Blo04g00496 Blo-Chr4:4134274 3.72E-22 transposed
Blo12g00937 Blo-Chr12:27538147 Blo04g00496 Blo-Chr4:4134274 1.96E-13 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
12261 PF02362 B3 2.50E-18 CL0405 Blo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo04g00496 - - mnt:21409635 469.544