Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo04g00500 ATGGAGGGTTGTTCTCTTCGTTCTTCAGCTTCATCCACTTTACCATCCTCCTCATCTCGATGTGGGTTTCTGCATAACTCATTGCCACATGTTCAGGCTCTTAAAATTTCCACTTTGAAGCCACCCCTACACTCCGGGAGGCTCAATTTTCTACGTATTAGAGCCCAAACTTCTAGTACAAAACAGTCCAGCTCAGAGGCGTTCTCAAAGAGAGCAGATTTGTGGGATAGTGATCTTGCTTTCGTTGCTGGGGCCACTGGTAAAGTTGGCTCGCGAACTGTAAGGGAGCTTTTGAAACTTGGGTTTCGAGTAAGAGCTGGAGTAAGAAGTACTCAGAAGGCAGAGAGTCTTGTTCAAAGTGTCAGGCAAATGACGCTCGACAGTGGTGATGCGACAGAAAATCAACCGGTAGAAAGGCTTGAAATTGTGAAATGTGACTTGGAGAAACAAGATCAAATAGGGGCAGCAATTGCCAATGCGGCCGTGGTTATTTGCTGTATTGGAGCGAGTGAGAAGGAAATTTTTGATATCACTGGTCCTTATAGGATTGACTATTTGGCTACCAAAAATTTGATTGAAGCAGCATCTGCTGCCAAAGTTGGTCACTTTATTTTACTTACGTCCCTGGGCACTAACAAGGTTGGATTTCCTGCTGCTATTCTCAATTTGTTTTGGGGAGTCCTCACCTGGAAAAGGAAGGCAGAAGAAGCATTGTTAGCCAGTGGGCTTCCTTATACAATAGTGAGACCTGGGGGCATGGAGCGGCCAACCGATGCTTTCAAGGAGACTCATAATCTGACTCTCTCACCAGAAGATACTTTATTTGGTGGTCTGGTGTCAAACCTTCAGGTGGCAGAGCTCATGGCATTCATGGCCCAAAATCCTGGTCTTTCATACTATAAAGTAGTTGAAGTAGTTGCAAAGATTACTGCGCCAAGGAGTCCCATGGAGGAACTTCTTCGGAACATTCCATCTCGAGATGGCATTTCTGTTGTTAAGGAATCAGGTGCAGGAGATGCACCCAATAAGAATGTGACAGCAGATATGGAAAGTAACATCACCGAGGCAAAACCAGCACCAACAAAAGCTCCAATAAAAACAACTCCACTTTCACCTTACACTGCTTATGAGGATCTGAAGCCACCAAGCTCCCCATGCCCAGTTCTAAGCACCCCTTCTAATAAGGTGCCTGCCAGTGGCCCGACCGTGGTTGATGCATCTGCTATAGGCATTGGCACCATAAAGGCTGCAGTCATCAACGTTGAAAACGGTGCTCCAAGGAATAAAGCTGATTATCGTTCACCTTTCCCCACTGATCTTTTAACGAAGTTCTTCAAGGATGAAAACTTCAATGGCAAAAGAAAAGCTTCTCATCTTCAGAGAATGGAAATGGGAGAATATGATGGCTCTGCACAACAGGGGAAATCTCGTATCAGTGACGTTCAGACTTCCTTGAAGCAAGAGGTAGTGCTTGATGATTTTCAAATATTTCAAGCTATTGTGCAACTTCAAGAACAGCTTCACTGCCAGTTTGTTGTAAGACAGGCCTTAGAGAAGGCAATAAGTCATAAGCTTTTCTCACAAGACACTTCGACAATTGAAAATTCAATACCAAAGGCTGCCATGGAACTGATCAATGACATTGCAGTATTAGAACAAGAAATTGTCAATTTGGAGCAAAATCTCCTGTCTCTGTACCGAAAAACATATCTACGACAAGTATCATCATTGTCGGCAATGGATACAAACAATAAAGTAGCTTCAGATTCTCCGGATTATACAATGCGAGAGGAAGAGAGGTTAGACCATTCTGTCTTCCCTCCGTTTCATCGAAATTCAGGCTGTTATACACGAGAAGGCAACGATGGTTTGGAACGGAACGAACTGCTCAATTTCGAGACCTATCAAAGCTTTTCCTTGCTTTCTTCGGATTCAGCACGTGCTATCATAAACTTCCCCATGTCACAGTCACTAGCTAAAGCTGTAGACACTTACCATTCTCTGCCATTATCAATGCTAGAGCAATCTGAAAGTGGTGCTTCAAACATATTTGGTGAGCATATTCGAAACTATATCCCAAATGCAGCGAATCAGACACTGAGTTGTATATCTGAAGAGATGATCAAGTGCATCTCTGCCATATATTGTGCACTTGCAGAACCGGGATTGATCCACCGTCATCACCACTCTTCTCCGATACCCTTTTCGTCATCATTTTATGAGCGTTCTTCGCAAGATCGTATCGGTTTTCGAATCCCAAAAGCTTCCCGCTTTGACAACCCATTTCGCAGCAGAGAATTTACTGGACCATACTGCAAAATGTTGAAAGTGAATTGGATTTCAAGAGACAGTCAGAGATCAAAATCTCTTTTCCCACAGGCTCTTTTGGTTCATGGGATCCCAAAAAATAGTCTGAAAAGGATGTCTTTCCTTCTGAAGGTCCGAATATATACGGCAAAGGGAATTTATGAAGAGCTGGAGGCTGCCAAAGAAGAGTATATTCAGGCCACACTCTACCAACACAAGGAGCAGAAAATCCTTCTCCCGAAAATCGTCGATTTTTTTGCAAAAGACTCGGGATTAAGCCCGGCCAAGCTGGCAGAGATGGTTGATCGCCTTTTGCCTAAAATCGAGCAGCACCGTCGAAACAAAAAACTTCAGAAGGGCAGCGTACATTGGATCCCTCACAGCTTCAACTTTCAATTTCTGCTATCGAAATCACTCCTAGCATTCTGA 2736 43.79 MEGCSLRSSASSTLPSSSSRCGFLHNSLPHVQALKISTLKPPLHSGRLNFLRIRAQTSSTKQSSSEAFSKRADLWDSDLAFVAGATGKVGSRTVRELLKLGFRVRAGVRSTQKAESLVQSVRQMTLDSGDATENQPVERLEIVKCDLEKQDQIGAAIANAAVVICCIGASEKEIFDITGPYRIDYLATKNLIEAASAAKVGHFILLTSLGTNKVGFPAAILNLFWGVLTWKRKAEEALLASGLPYTIVRPGGMERPTDAFKETHNLTLSPEDTLFGGLVSNLQVAELMAFMAQNPGLSYYKVVEVVAKITAPRSPMEELLRNIPSRDGISVVKESGAGDAPNKNVTADMESNITEAKPAPTKAPIKTTPLSPYTAYEDLKPPSSPCPVLSTPSNKVPASGPTVVDASAIGIGTIKAAVINVENGAPRNKADYRSPFPTDLLTKFFKDENFNGKRKASHLQRMEMGEYDGSAQQGKSRISDVQTSLKQEVVLDDFQIFQAIVQLQEQLHCQFVVRQALEKAISHKLFSQDTSTIENSIPKAAMELINDIAVLEQEIVNLEQNLLSLYRKTYLRQVSSLSAMDTNNKVASDSPDYTMREEERLDHSVFPPFHRNSGCYTREGNDGLERNELLNFETYQSFSLLSSDSARAIINFPMSQSLAKAVDTYHSLPLSMLEQSESGASNIFGEHIRNYIPNAANQTLSCISEEMIKCISAIYCALAEPGLIHRHHHSSPIPFSSSFYERSSQDRIGFRIPKASRFDNPFRSREFTGPYCKMLKVNWISRDSQRSKSLFPQALLVHGIPKNSLKRMSFLLKVRIYTAKGIYEELEAAKEEYIQATLYQHKEQKILLPKIVDFFAKDSGLSPAKLAEMVDRLLPKIEQHRRNKKLQKGSVHWIPHSFNFQFLLSKSLLAF 911
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 4151146 4162068 - BLOR13412 Blo04g00500 59528

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo04g00500 911 Coils Coil 541 568 - -
Blo04g00500 911 PANTHER PROTEIN TIC 62, CHLOROPLASTIC 1 397 IPR044719 -
Blo04g00500 911 CDD SDR_a5 81 308 - -
Blo04g00500 911 Pfam Leucine-zipper of ternary complex factor MIP1 496 570 IPR025757 -
Blo04g00500 911 Pfam NAD(P)H-binding 84 295 IPR016040 -
Blo04g00500 911 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 79 310 IPR036291 -
Blo04g00500 911 Gene3D - 79 326 - -
Blo04g00500 911 MobiDBLite consensus disorder prediction 334 366 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo04g00500 - - - gra:105795154 478.404
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo04g00500 Blo-Chr4:4151146 Blo05g00605 Blo-Chr5:15769995 5.74E-14 dispersed
Blo04g00500 Blo-Chr4:4151146 Blo12g00426 Blo-Chr12:21683742 1.45E-10 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g543 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone12ag1128 Cone8ag1175 . . . Csa07g00820 . . Blo04g00500 . . Bda14g00534 . . Bma03g01401 . . . . . . . Car19g00488 . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002707 3 2 3 1 1 2 1 1 2 2 1 2 1 2 2 2 2 2 2 1 2 2 2 2 1 2 1 4 4 2 57