Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo04g00506 ATGCACGGCGACGCCGGAACCCTATCCTTCTCCGGTGTAGAATCTCCCTCGTCGGAGCCGGCATCGTCGCGTCGACGTGCTGGAGCTCAGAAGCGAAAAGCCAGCATCCTAGGGCCATCGAATAGCTTAACCACGCCTTCAAAACGCATCACCCGAGCTCGCCAGGTCCCCAGCAGCCTAGCTGCTACCGCGTCGGATTTTTCGGCGGGAGGAGTGGCTGCCCCTGCCAGCTCAGTGAAGGCGGAGATCACGACCAGTTTGGGAGTTCCTCGGGCAGAAGCGGTGGTGGCGCCCGCTGTCGCTGAGAAATTGAACAAAGAGAGTAAATTAGAGGCTCTGGAGGCTTCGTTCGAAGCTAAGTTTGAAGCTATTAGATCGCGTGGTGCCAATGCTCACGTGGTTCCAAATCATTGCGGTTGGTTTTCATGGACTCACATACACCCTATAGAGGAGCGCACAATGCCTACTTTTTTCAATTCTAAAACTGAGACTCGAACTCCAGATATTTATATGGAGATACGTAATTGGATTTTGAAGAAATTCCATACAAATCCAAATGTACAAATATCATTGGAGGATTTGTCGGAGCTTGAATCTCGAGACTCGGATGCGAAACAAGAGGTAATGGAGTTTTTAGATCACTGGGGTCTGATTAATTTCCACCCATATCCACCCAGTGCAGAAAGCTCTTCTCCTACCAACACTATTGAAGATAAGTTGCCAAATGACCCATTGATTGAAAAGTTATATCGCTTTGAAACATTGAATTCCTGTTCATCAATACCTCCAAAGACTACCATTGCTCCAGCATTGCCATCTGGATTGTTTCCAGAAAAAACGATTGTCGAAGATTTAATGAAACCCGAGGTGCCAGCTTACCACTGCAACTCCTGTTCAGCTGACTGCTCTCGCAAGCGTTACCATTGTCAGAAGCAGGCAGATTTTGATTTATGTACGGAGTGCTTTAACAATGGGAAATTTGACTCTGACATGTCTTCATCGGATTTTATTCTCATGGAGCCTGCTGAGGTTCATGGGGTGAGTGGTGGGAAGTGGACAGATCAGGAGACTCTCCTCCTCCTTGAAGCTTTAGAACTTTATAAAGAAAACTGGAATGAGATTGCTGAGCATGTTGCAACAAAAACAAAGGCTCAATGTATACTGCATTTCCTTCAAATGCCAATTGAGGACACCTTTCTTGATTTTAACGAGGATGCAGATTCTATTTCCAAAAAACCTGAGGATCCACCTTCAAAAGAAAATGATTTGGCAACCCTTGAAGATGCTGCTGACGTAACTCATGGCAAAATTGGTTTTAAGGAGGATCAGCCTCCAACTTCCCACATTGGAGCTGCCAAGGGTGAAAGTAACATGAAAAATTCAAAAGTAGAAGAAGCGAGGGAAATGAAAAATGTCCTAGGAAGTTCAAAATTTGAAAATGGTCACCTGGAGATTAGTGAAACTGAAAACTGTGCGTTGAAGGCTCTAAAGGAAGCTTTTGAAGCCACTGGGTCTCTTTCAATACCTGAATGCTCGTTTTCATTTGCTGATGTAGGGAACCCTGTTATGGCATTGGCTGCATTCCTAGCTAGATTAGTTGGCCCAGAAATTGCTAGTGCATCAGCACATAATTCTTTAAAAGCCATATCCGGGAGTTCTCCCAGCATGGAACTTGCCGCAAGATACTGCTTCTTTTTGGAAGACCCGCCTGATGGCAAGGAAGAACTTAACTCAGAGCGTGGGAGGATTGGTGGGACTAAACTGAATGATGAAAGTCAACAAGCCAAGCAAAATGGCAGCACCGTTTTGAATGAACCAAAAAAGACAGAATTACCAAAGGATGACAGAGAGAATCTTATGAAGGCGTCGGATCTCAAATCCATGGTGGGTGTTGAACTGACTTCAGAGGTGGAAGAGGGAATGTGTACAAGAGGGTCTTCTAAACCAACTGCAACAAAAGAGGTGGGTACCACAGAATTGCCGCCCTCTGAAAAGAATGGCTCTCAGGAGCCAGCTACATTTAATTGTGCGGATGAGACTGCCCATTCAATGAAGGACGTGGAAATGAAACAGGATCCACAGCCCTTGTCAAAAAATGGACCTTTGCAACCTGTTGTAACTAGTCCATCTGGACGGGATATGGAACCTAGAGTAGCGCAAAAAGATGTTGACAGTGTGCCGGAATGTCACTCAGAAACATCAAATTTTATGGGGGACAATGGAGAAAATAGAGATCCCTCCATCTCGTTGCATTCAGAAAAAAGTGTGCCTCTGCAACCATCTGTATCGAATTCAGTTTTGAGTGACACAGGTGAAGCTGAAGTGAGAGTTATTAATAAAGAGGTTGGTGGCTTTAAAGTAAGAGGGAATGATGATAAAATTGATAAGTTGAAAAATGCTGCGGTTGCTGCACTATCAGCTGCTACTGTAAAAGCAAGACTTCTGGCAAAGGAGGAAGAGGAACATATCCGACAGCTTTCTGCCTTCTTGATAGAAAAGCAGTTACATAAGTTGGAATCCAAGTTGGCTTTTTTTGATGAGATGGATAATGTCATAGTGAGGGTGAGAGAGCAATTAGATCGGTCAAAGCAGAGGCTATACCAGGAGCGTGCACAGATAATTGCTGCACGACTTGGTTTACCAGCTTCCTCCGGAAAAACCATTCCTCCAGGGTTACCTACTGGTAGATTTGGTATGACCTTGGGAAACTCAGTTCCAAGGCCTCCATCGAGTATGACTTCCCCAAGGCCACCAATCTCTAGATCCATGGGTACGGTGTCTCCTTCTAGCTTATTTGTATCTCCTACAGTTGCAGGAAATTCTTTTAGGCCATCTACTTAG 2841 44.95 MHGDAGTLSFSGVESPSSEPASSRRRAGAQKRKASILGPSNSLTTPSKRITRARQVPSSLAATASDFSAGGVAAPASSVKAEITTSLGVPRAEAVVAPAVAEKLNKESKLEALEASFEAKFEAIRSRGANAHVVPNHCGWFSWTHIHPIEERTMPTFFNSKTETRTPDIYMEIRNWILKKFHTNPNVQISLEDLSELESRDSDAKQEVMEFLDHWGLINFHPYPPSAESSSPTNTIEDKLPNDPLIEKLYRFETLNSCSSIPPKTTIAPALPSGLFPEKTIVEDLMKPEVPAYHCNSCSADCSRKRYHCQKQADFDLCTECFNNGKFDSDMSSSDFILMEPAEVHGVSGGKWTDQETLLLLEALELYKENWNEIAEHVATKTKAQCILHFLQMPIEDTFLDFNEDADSISKKPEDPPSKENDLATLEDAADVTHGKIGFKEDQPPTSHIGAAKGESNMKNSKVEEAREMKNVLGSSKFENGHLEISETENCALKALKEAFEATGSLSIPECSFSFADVGNPVMALAAFLARLVGPEIASASAHNSLKAISGSSPSMELAARYCFFLEDPPDGKEELNSERGRIGGTKLNDESQQAKQNGSTVLNEPKKTELPKDDRENLMKASDLKSMVGVELTSEVEEGMCTRGSSKPTATKEVGTTELPPSEKNGSQEPATFNCADETAHSMKDVEMKQDPQPLSKNGPLQPVVTSPSGRDMEPRVAQKDVDSVPECHSETSNFMGDNGENRDPSISLHSEKSVPLQPSVSNSVLSDTGEAEVRVINKEVGGFKVRGNDDKIDKLKNAAVAALSAATVKARLLAKEEEEHIRQLSAFLIEKQLHKLESKLAFFDEMDNVIVRVREQLDRSKQRLYQERAQIIAARLGLPASSGKTIPPGLPTGRFGMTLGNSVPRPPSSMTSPRPPISRSMGTVSPSSLFVSPTVAGNSFRPST 946
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 4295460 4300376 + BLOR13418 Blo04g00506 59534

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo04g00506 946 ProSitePatterns Zinc finger ZZ-type signature. 295 321 IPR000433 GO:0008270
Blo04g00506 946 CDD ZZ_RSC8 293 337 IPR041984 -
Blo04g00506 946 PANTHER SWI/SNF COMPLEX-RELATED 31 921 - -
Blo04g00506 946 ProSiteProfiles SANT domain profile. 347 398 IPR017884 -
Blo04g00506 946 SUPERFAMILY RING/U-box 288 341 - -
Blo04g00506 946 CDD SANT 368 393 IPR001005 -
Blo04g00506 946 MobiDBLite consensus disorder prediction 436 461 - -
Blo04g00506 946 SUPERFAMILY Homeodomain-like 139 221 IPR009057 -
Blo04g00506 946 MobiDBLite consensus disorder prediction 1 56 - -
Blo04g00506 946 MobiDBLite consensus disorder prediction 571 586 - -
Blo04g00506 946 MobiDBLite consensus disorder prediction 645 676 - -
Blo04g00506 946 MobiDBLite consensus disorder prediction 901 946 - -
Blo04g00506 946 MobiDBLite consensus disorder prediction 571 615 - -
Blo04g00506 946 Gene3D - 290 338 IPR043145 -
Blo04g00506 946 MobiDBLite consensus disorder prediction 10 24 - -
Blo04g00506 946 MobiDBLite consensus disorder prediction 916 946 - -
Blo04g00506 946 MobiDBLite consensus disorder prediction 750 767 - -
Blo04g00506 946 Pfam Myb-like DNA-binding domain 350 392 IPR001005 -
Blo04g00506 946 Gene3D - 138 223 IPR036388 -
Blo04g00506 946 MobiDBLite consensus disorder prediction 587 605 - -
Blo04g00506 946 SMART zz_5 289 333 IPR000433 GO:0008270
Blo04g00506 946 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 350 398 IPR017930 -
Blo04g00506 946 SUPERFAMILY Homeodomain-like 347 400 IPR009057 -
Blo04g00506 946 MobiDBLite consensus disorder prediction 35 56 - -
Blo04g00506 946 Pfam Zinc finger, ZZ type 292 327 IPR000433 GO:0008270
Blo04g00506 946 ProSiteProfiles SWIRM domain profile. 132 229 IPR007526 GO:0005515
Blo04g00506 946 PANTHER SWI/SNF COMPLEX SUBUNIT SWI3D 31 921 - -
Blo04g00506 946 Pfam SWIRM-associated region 1 803 880 IPR032451 -
Blo04g00506 946 ProSiteProfiles Zinc finger ZZ-type profile. 290 344 IPR000433 GO:0008270
Blo04g00506 946 ProSiteProfiles Myb-like domain profile. 350 394 IPR001005 -
Blo04g00506 946 Gene3D - 347 398 - -
Blo04g00506 946 SMART sant 348 396 IPR001005 -
Blo04g00506 946 MobiDBLite consensus disorder prediction 638 767 - -
Blo04g00506 946 Pfam SWIRM domain 135 220 IPR007526 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo04g00506 K11649 SMARCC; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily C - mnt:21409554 855.129
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo04g00506 Blo-Chr4:4295460 Blo12g01124 Blo-Chr12:28868050 3.09E-53 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g579 . . . . . . . . Cmo19g00671 . . . . . . . Cpe15g00532 Bhi05g01108 . . . . . . Cla02g00530 Cam02g0548 Cec02g0549 Cco02g0555 Clacu02g0549 Cmu02g0544 Cre02g0875 Cone12ag1145 Cone8ag1193 . . . . . . Blo04g00506 . . Bda14g00547 . . Bma03g00547 . . . . . Cma19g00658 . Car19g00501 . . . . . . . . . . . . . . . . Lsi11g01094 . Chy01g00796 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007586 1 1 1 1 1 1 2 1 1 1 1 1 2 0 1 3 1 2 2 1 1 1 1 1 2 1 1 1 1 1 36
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo04g00506 Blo_Chr04 FPKM 1.017842 1.320994 0.311508 0.369742 0.411465 0.0 0.655153 0.302643 0.154247 0.262035