Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo04g00508 ATGGCTCAGCCTCTCGCAAAGAAGGATGACGACCGTGACGACGAAGTTGATTATTCTCCATTCTTGGGAATTGAAAAAGGAGCTGTTCTTCAGGAAGCAAGAGTCTTCAATGATCCTCAGCTTGATCCTAGGAGATGCTCTCAGGTTATCACAAAGCTTCTGTATCTGCTGAATCAGGGAGAAATCTTCACTAAGATTGAAGCCACAGAAGTTTTCTTTGCGGTGACAAAGCTTTTCCAGTCAAGAGACACAGGGTTGAGAAGAATGGTTTACTTAATGATAAAGGAGCTCTCTCCTTCTGCTGATGAGGTTATTATTGTGACAAGCTCCCTGATGAAGGACCTGAATAGCAAGACTGATATGTATCGGGCTAATGCCATTCGTGTGCTTTGCCGAATAACAGACGGAACCCTTCTCACCCAGATTGAGCGATATCTGAAACAAGCAATTGTGGATAACAATCCAGTAGTTGCCAGTGCAGCCTTAGTTAGTGGGATTCATTTGTTCCAGATTTGTCAGAATGATCGATTAGCAGTTAGTAAATTGTTTACTAGCTTGATAAGGGGAGGGGGTACTGTTAGATCTCCTCTGGCTCAATGCCTCTTGATTCGCTATACTAGTCAGGTTACTCGGGAGTCAGCCATCAACATATTAACTGGGGATCGACCATTTTATGGTTTTTATGAGGGTTGTTTGCGCCACAAAGCAGAAATGGTGATATTTGAGGCTGCTAGAGCAATTACAGAGCTGAATGGTGTTCCAAGCAGAGAATTGACACCAGCAATTACTGCTCTCCAACTCTTTTTAAGCTCTGCTAAGCCAGTGTTGCGATTTGCAGCTGTTCGCACTTTGAACAAGGTGGCAATGACACATGCAATGGCTGTCGCTAATTGCAACATTGATATGGAAAGCTTGATTTCTGACCAAAATAGGAGCATAGCAACTCTTGCTATTACCACACTTCTCAAGACAGGAAACGAATCCAGTGTTGATAGATTAATGAAACAGATAACAAATTTCATGTCGGATATTGCTGATGAATTCAAAATTGTAGTCATAGAAGCCATACGATCTTTGTGTTTGAAGTTTCCTTTGAAATACAGATCTCTGATGAATTTCTTGAGCAGCATTCTGAGAGAAGAAGGTGGGTTTGAATATAAAAAGGCTATTATTGATTCAATTGTTATCCTGATAAGAGATATTCCTGACGCAAAAGACAGTGGGTTGCTTCATTTGTGTGAATTTATTGAAGACTGTGAATTCACCTATCTATCCACCCAGCAGATACTCCACTTTTTGGGGATCGAAGGTCCAAAAACCTCTGATCCTAGCAAATATATACGGTACATATATAATAGAGTGCATCTCGAGAATGCAACTGTACGTGCTAGTGCAGTCAGCTCTTTGGCAAAGTTTGGTGCCCTGGTTGATTCATTGAAGCCCCGAGTATTTGTGCTGTTAAGAAGATGTCTATTTGACACTGATGATGAGGTTCGTGATAGGGCAACACTTTATCTCAATACCCTTGGAGTCGATGGTTCAGTTGTTGAAAAAGAGAAAGATGTGAAGGAATTCCTTTTTGGATCGTTGGATATCCCGTTGGTTAATATTCAGACAAGCTTGAACAATTATGAGCCATCTGAAGAACCTTTTGATATTAATGTGGTCCCCAAGGAGATTAAAATTCAACCACTTGCTGAGAAGAAAGCCCCAGGTAAAAAGCCGACAGGGCTTGGTGCTCCTCCTAGTGCTGCTTCATCAACTGTTGATACATATGAAAGGCTGCTTTCATCTATTCCTAAATTTGCTGGCTTTGGAAGGCTTTTCAAGTCTTGCGCACCTGTAGAGTTGTCTGAAGCTGAAACAGAATATGCAGTTAATGTTGTCAAGCATATTTTTGATAGGCACATCGTGTTCCAGTACAACTGCACTAATACAATTCCAGAGCAATTACTTGAAAATGTTTCTGTAATCGTGGATGCTTCAGAAGCAGAGGGATTTTCTAAAGTTGCATCCCATCCTCTCAGATCTCTTCCCTATGACACGCCTGGACAGACCTTTGTGGCATTTGAGAGGCCGGAAGGAGTCCCTACTGTTGGAAAATTTTCAAATACGTTAAGGTTCATTGTTAAAGAGGTTGACCCAAGCACTAGGGAGGCAGAGGAAGATGGTGTGGAAGATGAATACCAGTTGGAAGACCTTGAGGTTGTTGCTCCTGATTACATGTTGAAAGTGGGAGTCTCTAATTTTAGGAGTGCTTGGGAAAGCATGGGTGCAGATTGTGAGCGGGTAGATGAATATGGACTTGGTCCTAGGGAGAGCCTTTCTGAAGCAGTGAGCGCTGTGATCAACCTTCTTGGCCTGCAGCCTTGTGAGGGAACTGAAGTCGTTGCAAGCAATTCAAGGTCGCACACTAGCTTGTTATCTGGAGTATATATTTGCAATGTCAATGTGCTGGTGCGGCTTTCTGTCGGTATTGATGCTTCCAGAGAGGTTGCAATGAAGCTGGCCGTCAGATCTGAGAATGAAGCCGTCAGCGACATCATTCACGGAATTGTGGCAAGTGGTTAG 2571 42.63 MAQPLAKKDDDRDDEVDYSPFLGIEKGAVLQEARVFNDPQLDPRRCSQVITKLLYLLNQGEIFTKIEATEVFFAVTKLFQSRDTGLRRMVYLMIKELSPSADEVIIVTSSLMKDLNSKTDMYRANAIRVLCRITDGTLLTQIERYLKQAIVDNNPVVASAALVSGIHLFQICQNDRLAVSKLFTSLIRGGGTVRSPLAQCLLIRYTSQVTRESAINILTGDRPFYGFYEGCLRHKAEMVIFEAARAITELNGVPSRELTPAITALQLFLSSAKPVLRFAAVRTLNKVAMTHAMAVANCNIDMESLISDQNRSIATLAITTLLKTGNESSVDRLMKQITNFMSDIADEFKIVVIEAIRSLCLKFPLKYRSLMNFLSSILREEGGFEYKKAIIDSIVILIRDIPDAKDSGLLHLCEFIEDCEFTYLSTQQILHFLGIEGPKTSDPSKYIRYIYNRVHLENATVRASAVSSLAKFGALVDSLKPRVFVLLRRCLFDTDDEVRDRATLYLNTLGVDGSVVEKEKDVKEFLFGSLDIPLVNIQTSLNNYEPSEEPFDINVVPKEIKIQPLAEKKAPGKKPTGLGAPPSAASSTVDTYERLLSSIPKFAGFGRLFKSCAPVELSEAETEYAVNVVKHIFDRHIVFQYNCTNTIPEQLLENVSVIVDASEAEGFSKVASHPLRSLPYDTPGQTFVAFERPEGVPTVGKFSNTLRFIVKEVDPSTREAEEDGVEDEYQLEDLEVVAPDYMLKVGVSNFRSAWESMGADCERVDEYGLGPRESLSEAVSAVINLLGLQPCEGTEVVASNSRSHTSLLSGVYICNVNVLVRLSVGIDASREVAMKLAVRSENEAVSDIIHGIVASG 856
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 4305496 4311823 + BLOR13420 Blo04g00508 59536

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo04g00508 856 Pfam Coatomer gamma subunit appendage platform subdomain 591 736 IPR013040 GO:0005198|GO:0006886|GO:0016192|GO:0030126
Blo04g00508 856 SUPERFAMILY ARM repeat 29 509 IPR016024 -
Blo04g00508 856 SUPERFAMILY Subdomain of clathrin and coatomer appendage domain 741 853 IPR009028 GO:0006886|GO:0016192|GO:0030117
Blo04g00508 856 PANTHER COATOMER SUBUNIT GAMMA 168 856 IPR017106 -
Blo04g00508 856 PANTHER COATOMER SUBUNIT GAMMA 1 170 IPR017106 -
Blo04g00508 856 PIRSF Gamma-COP 167 854 IPR017106 -
Blo04g00508 856 PIRSF Gamma-COP 7 174 IPR017106 -
Blo04g00508 856 Pfam Coatomer subunit gamma-1 C-terminal appendage platform 740 852 IPR032154 -
Blo04g00508 856 Gene3D - 23 170 IPR011989 -
Blo04g00508 856 SUPERFAMILY Clathrin adaptor appendage domain 584 740 IPR013041 -
Blo04g00508 856 Gene3D Coatomer, gamma subunit, appendage domain 583 737 IPR037067 GO:0005198|GO:0006886|GO:0016192|GO:0030126
Blo04g00508 856 Pfam Adaptin N terminal region 173 509 IPR002553 GO:0006886|GO:0016192|GO:0030117
Blo04g00508 856 Gene3D - 171 519 IPR011989 -
Blo04g00508 856 PANTHER COATOMER SUBUNIT GAMMA 168 856 - -
Blo04g00508 856 PANTHER COATOMER SUBUNIT GAMMA 1 170 - -
Blo04g00508 856 Gene3D - 738 854 IPR012295 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo04g00508 K17267 COPG; coatomer subunit gamma - zju:107426916 1448.34
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Blo02g00800 Blo04g00508 CCT
Blo04g00508 Blo13g00555 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo02g00800 Blo-Chr2:27287626 Blo04g00508 Blo-Chr4:4305496 0 dispersed
Blo19g00330 Blo-Chr19:21899238 Blo04g00508 Blo-Chr4:4305496 2.29E-06 dispersed
Blo13g00555 Blo-Chr13:27526283 Blo04g00508 Blo-Chr4:4305496 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g582 Blo02g00800 . . Bda08g00925 . Bpe12g00078 . . Cmo19g00674 . Cma02g00404 . Car02g00264 Car20g00739 Sed05g2322 Cpe04g00125 Cpe15g00534 Bhi05g01224 Tan02g0807 Cmetu01g1965 . Hepe02g0514 . . Cla02g00528 Cam02g0546 Cec02g0547 Cco02g0553 Clacu02g0547 Cmu02g0542 Cre02g0873 Cone12ag1147 Cone8ag1195 Cone3ag1158 . Lsi10g00358 . Chy11g00388 Cme01g01429 Blo04g00508 Blo13g00555 . Bda14g00549 Bpe15g00871 . . . Sed01g0309 Cmo02g00409 Cmo20g00865 . Cma19g00660 . Car19g00503 . Cpe05g01253 Bhi10g02020 Tan05g1319 Cmetu11g0171 . Hepe08g1023 . . . . . . . . . Lsi11g01096 Csa02g01249 Chy01g00794 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001661 4 2 3 0 2 2 3 2 2 2 2 2 3 2 2 4 2 3 4 2 2 2 2 2 2 2 2 4 3 1 70
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo04g00508 Blo_Chr04 FPKM 10.219616 11.51687 0.0 0.0 1.709769 2.19425 1.962187 0.0 0.0 0.0