Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo04g00509 ATGGCGGTTTCTGGTAATCACTCGGCAGAAGTTCGGGCGTCGGATGATTCCGTCATTCGCACACTCAATTCGAAAACTATTGTTTTTAGCTTAAAGCTTTACGTCGTGATCGGAGTCGTCGCTGCGTGCTTAATCGCCGCTTTCCTTGTGATTTTTTTATGCGTCCGTAAAAGTAAAAGTTCGAGGAAGAGTAAAATGCGGGTAAAGCACAGCCCGGGTTTGGGTCCCCTGGTCTCGCTGGAGATCCCGGAGATCAAAGCATTGGATTGCGTTCAGAACTGTGACAAGGAGGGGGCAGGAGCTGAAATTATAAATCCTATGAAAATAATGGACATTGAGACTGGGAGAGGGAAAAAGAGCGAAGAGAGTGATGCGTCTGCCTCCAGTGGAAGCCGAAGTGATGTGTCGGTAGAAACACCGAACATAGGATGGGGGCGCTGGTACAGCTTGAAGGAGCTAGATATAGCAACATGTGGATTCGCAGAAGAGAACGTGATCGGAGAAGGCGGATATGGAATCGTGTACAAGGGGGTTTTGCTGGACGGGTCGGTGGTAGCTGTGAAGAATCTTCTTAACAATAAGTATGCATATTTAAAATTAGAATATACTCCTATTCGTTTCACTAGTGGAACTTGGATCTGGACCTTGTGTTTGGCATCATGTCCGGAAGGCTTTTTTGCGGAGGGTCAGGCAGAGAAAGAGTTCAAAGTTGAAGTAGAGGCTATTGGTAAAGTAAGGCATAAAAACTTGGTGGGTTTGGTAGGTTATTGTGCCGAAGGTGCTAAAAGGATGCTTGTATATGAATTTGTTGACAACGGAAATTTGGAGCAATGGTTGCATGGAGACGTAGGTTCTGTTAGTCCATTGACATGGGATATTCGGATAAGAATTGCTATTGGGACTGCAAAGGGATTGGCCTATTTGCATGAAGGCTTAGAACCTAAAGTTGTACACCGTGATGTAAAATCCAGTAACATTCTTTTGGATAGAAAGTGGCATCCAAAAGTATCCGACTTTGGACTAGCTAAGCTTTTAGGATCTGAGGCAACCCATGTAACTACTCGTGTTATGGGGACCTTTGGTTATGTCTCTCCTGAGTATGCAAGTACAGGAATGCTTAATGAAGGAAGTGATGTGTATAGTTTTGGAGTTTTACTAATGGAAATTATAACTGGAAGAAGTCCAATTGATTATTCCAAACCTGCGGGAGAGATGAACTTGGTCGACTGGTTTAAAGGAATGGTGGCAAATCGACGTGGTGAGGAGGTTGTAGATCCCCTGATCGAGGTTCAGCCCTCACCGAGAGCTTTAAAGCGTGTATTGCTTGTTTGTCTTCGTTGCATAGACTTGGATGCTGTTAAGCGGCCAAAAATGGGGCAAATTGTTCATATGCTAGAGGCAGATGACTTTCCATTTCACACTCAATTTGTAGAACTCTGCAGACAGTTGTGGGAAAGAAGCATCCAATCGCTAGGCAGCTTCATAGTCGACCCACCACTTGCTGAGCTGAAGGAGCGCCATGCGGCGGCTATTCAGACAGTGAACGTCCTCAGAGACCGCTTGAAGCAGAGGCGGATCACTTTTCTCGATACTGATGTTTCGGAGTATGCAAGGTCGCGGGGAAAGAGTCCCGTCTGCTTCGGACCATCGGATCTAGTGTGCTGCAGAACGTTGCAGGGTCATTCAGGAAAAGTATATTCATTGGACTGGACTCCGGATAGGAATAGAATTGTCAGTGCATCTCAAGATGGGAGGTTAATTGTGTGGAATTCTCTGACCAGCCAAAAGATCCATGCTATAAAACTGCCTTGCCCATGGGTCATGACTTGTTCTTTCTCACCTTCTGGTCAGTCCGTTGCTTGTGGTGGTCTTGATAATGTTTGCTCAATCATCAACCTGAATTCCCTCACTGATATGGATGGGAATCTACCGGTAGCGAAAGTGCTTAGTGGGCATAAAGGTTATGTTTCGGCCTGTCAATATGTTCCAGATGAGGATACTCATCTCATTACCAGTTCCGGTGACCATACATGTATATTATGGGATATTACCATTGGACTTAGAACATCTGTTTTTGGAGGTGAATTTCAGTCTGGACACACTGCAGACGTATTGAGTGTGTCAATTAATGGGTCCAACTCAAGAATGTTCTTATCTGGTTCATGTGATGGAACTGTGCGATTATGGGACACTCGTGTAGCTAGTCGAGCTGTGCAGACATATCATGGGCACGATGTAGATGTAAATACTGTGAAGTTCTTTCCAGATGGTAACAGATTTGGAACTGGCTCAGATGATGGTACTATCAGATTGTTTGACATCAGGAGTGGACACCTACTCCAAGTGTACCATCAACAGCACAGTGATAATGACTCACCGCCTGTAACCTCCATTGCATTCTCCATATCAGGAAGACTTCTGTTTGCTGGATATAGGAATGGTGATTGCTATGTGTGGGATACGCTTCTAGCTAAGGTGGTTTTGAACTTGGGATCTCTTCCAAACTCACATGAAGGACGGATAAGCTGTTTGGGATTGTCTGCTGACGGAAGTGCCTTGTGTACCGGAAGTTGGGATTCAAATCTCAAGGTGAGTCTGAATGCTGAGCGTTATAACTTCATTCAATCCATAAATTATATCCATGTGCATAAGCAGCTACCAACTTCTAATGCCAGATCGACTCTCTCCTCTACTTTATTGGTTTGGGAAGTTGTGTACGCTGTTGAAAACTTGTCCTTGATGCTAATCTAG 2751 44.75 MAVSGNHSAEVRASDDSVIRTLNSKTIVFSLKLYVVIGVVAACLIAAFLVIFLCVRKSKSSRKSKMRVKHSPGLGPLVSLEIPEIKALDCVQNCDKEGAGAEIINPMKIMDIETGRGKKSEESDASASSGSRSDVSVETPNIGWGRWYSLKELDIATCGFAEENVIGEGGYGIVYKGVLLDGSVVAVKNLLNNKYAYLKLEYTPIRFTSGTWIWTLCLASCPEGFFAEGQAEKEFKVEVEAIGKVRHKNLVGLVGYCAEGAKRMLVYEFVDNGNLEQWLHGDVGSVSPLTWDIRIRIAIGTAKGLAYLHEGLEPKVVHRDVKSSNILLDRKWHPKVSDFGLAKLLGSEATHVTTRVMGTFGYVSPEYASTGMLNEGSDVYSFGVLLMEIITGRSPIDYSKPAGEMNLVDWFKGMVANRRGEEVVDPLIEVQPSPRALKRVLLVCLRCIDLDAVKRPKMGQIVHMLEADDFPFHTQFVELCRQLWERSIQSLGSFIVDPPLAELKERHAAAIQTVNVLRDRLKQRRITFLDTDVSEYARSRGKSPVCFGPSDLVCCRTLQGHSGKVYSLDWTPDRNRIVSASQDGRLIVWNSLTSQKIHAIKLPCPWVMTCSFSPSGQSVACGGLDNVCSIINLNSLTDMDGNLPVAKVLSGHKGYVSACQYVPDEDTHLITSSGDHTCILWDITIGLRTSVFGGEFQSGHTADVLSVSINGSNSRMFLSGSCDGTVRLWDTRVASRAVQTYHGHDVDVNTVKFFPDGNRFGTGSDDGTIRLFDIRSGHLLQVYHQQHSDNDSPPVTSIAFSISGRLLFAGYRNGDCYVWDTLLAKVVLNLGSLPNSHEGRISCLGLSADGSALCTGSWDSNLKVSLNAERYNFIQSINYIHVHKQLPTSNARSTLSSTLLVWEVVYAVENLSLMLI 916
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 4313096 4320180 - BLOR13421 Blo04g00509 59537

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo04g00509 916 Pfam WD domain, G-beta repeat 554 590 IPR001680 GO:0005515
Blo04g00509 916 Pfam WD domain, G-beta repeat 781 820 IPR001680 GO:0005515
Blo04g00509 916 Pfam WD domain, G-beta repeat 698 730 IPR001680 GO:0005515
Blo04g00509 916 Pfam WD domain, G-beta repeat 647 682 IPR001680 GO:0005515
Blo04g00509 916 Pfam WD domain, G-beta repeat 738 773 IPR001680 GO:0005515
Blo04g00509 916 SUPERFAMILY WD40 repeat-like 543 864 IPR036322 GO:0005515
Blo04g00509 916 ProSitePatterns Trp-Asp (WD) repeats signature. 669 683 IPR019775 -
Blo04g00509 916 Gene3D Transferase(Phosphotransferase) domain 1 270 475 - -
Blo04g00509 916 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 741 777 - -
Blo04g00509 916 CDD WD40 554 864 - -
Blo04g00509 916 Gene3D Phosphorylase Kinase; domain 1 123 203 - -
Blo04g00509 916 Gene3D Phosphorylase Kinase; domain 1 222 269 - -
Blo04g00509 916 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 649 683 - -
Blo04g00509 916 ProSitePatterns Protein kinases ATP-binding region signature. 166 188 IPR017441 GO:0005524
Blo04g00509 916 SMART serkin_6 160 472 IPR000719 GO:0004672|GO:0005524|GO:0006468
Blo04g00509 916 Coils Coil 500 520 - -
Blo04g00509 916 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 697 732 - -
Blo04g00509 916 ProSiteProfiles Trp-Asp (WD) repeats profile. 649 683 IPR001680 GO:0005515
Blo04g00509 916 ProSiteProfiles Trp-Asp (WD) repeats profile. 697 739 IPR001680 GO:0005515
Blo04g00509 916 ProSitePatterns Serine/Threonine protein kinases active-site signature. 316 328 IPR008271 GO:0004672|GO:0006468
Blo04g00509 916 CDD STKc_IRAK 166 466 - -
Blo04g00509 916 PANTHER OS01G0323000 PROTEIN 10 194 - -
Blo04g00509 916 PANTHER OS01G0323000 PROTEIN 228 475 - -
Blo04g00509 916 SUPERFAMILY Protein kinase-like (PK-like) 134 466 IPR011009 -
Blo04g00509 916 ProSiteProfiles Protein kinase domain profile. 160 476 IPR000719 GO:0004672|GO:0005524|GO:0006468
Blo04g00509 916 Gene3D - 507 864 IPR015943 GO:0005515
Blo04g00509 916 ProSiteProfiles Trp-Asp (WD) repeats profile. 558 599 IPR001680 GO:0005515
Blo04g00509 916 PANTHER OS03G0227900 PROTEIN 10 194 - -
Blo04g00509 916 MobiDBLite consensus disorder prediction 115 136 - -
Blo04g00509 916 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 558 590 - -
Blo04g00509 916 Pfam Protein tyrosine and serine/threonine kinase 230 465 IPR001245 GO:0004672|GO:0006468
Blo04g00509 916 PRINTS Beta G protein (transducin) signature 614 631 IPR001632 -
Blo04g00509 916 PRINTS Beta G protein (transducin) signature 577 591 IPR001632 -
Blo04g00509 916 PRINTS Beta G protein (transducin) signature 596 611 IPR001632 -
Blo04g00509 916 PRINTS Beta G protein (transducin) signature 558 574 IPR001632 -
Blo04g00509 916 SMART WD40_4 551 590 IPR001680 GO:0005515
Blo04g00509 916 SMART WD40_4 642 682 IPR001680 GO:0005515
Blo04g00509 916 SMART WD40_4 776 820 IPR001680 GO:0005515
Blo04g00509 916 SMART WD40_4 593 632 IPR001680 GO:0005515
Blo04g00509 916 SMART WD40_4 734 773 IPR001680 GO:0005515
Blo04g00509 916 SMART WD40_4 689 730 IPR001680 GO:0005515
Blo04g00509 916 SMART WD40_4 826 866 IPR001680 GO:0005515
Blo04g00509 916 ProSiteProfiles Trp-Asp (WD) repeats profile. 741 782 IPR001680 GO:0005515
Blo04g00509 916 PRINTS G protein beta WD-40 repeat signature 669 683 IPR020472 -
Blo04g00509 916 PRINTS G protein beta WD-40 repeat signature 577 591 IPR020472 -
Blo04g00509 916 PRINTS G protein beta WD-40 repeat signature 717 731 IPR020472 -
Blo04g00509 916 PANTHER OS03G0227900 PROTEIN 228 475 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo04g00509 K04536 GNB1; guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-1 - csin:114285042 651.358
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Blo02g00801 Blo04g00509 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo04g00509 Blo-Chr4:4313096 Blo17g00877 Blo-Chr17:28915243 2.61E-162 dispersed
Blo02g00801 Blo-Chr2:27309510 Blo04g00509 Blo-Chr4:4313096 0 transposed
Blo06g01153 Blo-Chr6:34945816 Blo04g00509 Blo-Chr4:4313096 9.44E-07 transposed
Blo13g00554 Blo-Chr13:27519862 Blo04g00509 Blo-Chr4:4313096 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g584 Blo02g00801 . . Bda08g00926 . . . . Cmo19g00675 . . . . . Sed05g2321 Cpe04g00124 Cpe15g00535 Bhi05g01225 Tan02g0806 Cmetu01g2025 . Hepe02g0513 . . Cla02g00527 Cam02g0545 Cec02g0546 Cco02g0552 Clacu02g0546 Cmu02g0541 Cre02g0872 Cone12ag1148 Cone8ag1196 . . . . . Cme01g01428 Blo04g00509 . . Bda14g00550 Bpe15g00870 . Bma03g00548 . . . . . Cma19g00661 . Car19g00504 . . . . . . . . . . . . . . . . Lsi11g01098 . Chy01g00793 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006109 0 1 2 1 0 0 2 0 0 1 1 0 2 1 0 2 0 0 2 0 1 0 0 0 0 1 0 0 0 1 18
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
84231 PF07714 PK_Tyr_Ser-Thr 3.20E-37 CL0016 Blo PK
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo04g00509 Blo_Chr04 FPKM 2.319902 1.989481 0.578304 0.687724 5.544534 4.695668 5.893239 0.703886 0.658275 0.703113