Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo04g00512 ATGGCTTCCGATACTGAGTATCGTTTGTTCGTAGGTGGGCTCGCTTGGGCCACCGACGAGAATACCTTAGAGCAGGCCTTTTCTCCTTATGGCGATATCGTTGAATCGAAGATTATTAATGACCGTGAGACCGGCAGATCTAGAGGTTTCGGATTCGTGACCTTTAGCAACGAGAAATCTATGAGAGAGGCTATCGAAGCCATGAATGGCTCGAGCCTTGATGGTCGTAACATCACAGTTAACGAGGCTCAGTCACGTGGAAGCGGTGGTGGTGGCGGAGGATTTGGCCGCGGCGGTGGCGGCGGTGGTTATGGACGTGGTGGTGGAGGCGGCGGTTACGGTGGTGGCGGTCGCCGTGATGGAGGTGGTGGTTATAACCGTGGAAACGGAGGAGGATACGGTGGTGGTGGTGGTGGAGGAGGACGTGACCGTGGATATGGTGACGGTGGTGCTCGTTACTCAAGGGGTGGCGGTGGATCAGACGGCGGTAATTGGAGGAATTAA 504 55.36 MASDTEYRLFVGGLAWATDENTLEQAFSPYGDIVESKIINDRETGRSRGFGFVTFSNEKSMREAIEAMNGSSLDGRNITVNEAQSRGSGGGGGGFGRGGGGGGYGRGGGGGGYGGGGRRDGGGGYNRGNGGGYGGGGGGGGRDRGYGDGGARYSRGGGGSDGGNWRN 167
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 4353245 4354022 + BLOR13424 Blo04g00512 59540

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo04g00512 167 Gene3D - 1 125 IPR012677 -
Blo04g00512 167 PANTHER GEO13361P1-RELATED 1 167 - -
Blo04g00512 167 SUPERFAMILY RNA-binding domain, RBD 4 117 IPR035979 GO:0003676
Blo04g00512 167 PANTHER RNA-BINDING PROTEIN GRP1A, PUTATIVE, EXPRESSED-RELATED 1 167 - -
Blo04g00512 167 SMART rrm1_1 8 81 IPR000504 GO:0003723
Blo04g00512 167 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 9 78 IPR000504 GO:0003723
Blo04g00512 167 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 7 85 IPR000504 GO:0003723
Blo04g00512 167 MobiDBLite consensus disorder prediction 72 86 - -
Blo04g00512 167 MobiDBLite consensus disorder prediction 68 167 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo04g00512 - - K13195 jre:109011181 146.747
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Blo04g00512 Blo13g00553 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo04g00058 Blo-Chr4:486429 Blo04g00512 Blo-Chr4:4353245 8.35E-22 dispersed
Blo04g00512 Blo-Chr4:4353245 Blo13g00244 Blo-Chr13:10683805 4.17E-31 dispersed
Blo15g00244 Blo-Chr15:2543901 Blo04g00512 Blo-Chr4:4353245 2.32E-10 dispersed
Blo02g00432 Blo-Chr2:5748771 Blo04g00512 Blo-Chr4:4353245 6.13E-08 transposed
Blo14g00467 Blo-Chr14:5832324 Blo04g00512 Blo-Chr4:4353245 5.53E-14 transposed
Blo13g00553 Blo-Chr13:27487818 Blo04g00512 Blo-Chr4:4353245 9.61E-45 wgd
Blo15g00338 Blo-Chr15:4070928 Blo04g00512 Blo-Chr4:4353245 9.57E-22 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g597 . . . . . Bpe12g00080 . . . . Cma02g00400 Cma20g00852 . . . . . . . . . . . . . . . . . . . . . . . Lsi10g00366 . Chy11g00381 . Blo04g00512 Blo13g00553 Bda15g00006 Bda14g00554 Bpe15g00866 . Bma03g00552 . Sed01g0304 Cmo02g00405 Cmo20g00861 . . . . . Cpe05g01257 Bhi10g02015 Tan05g1313 Cmetu11g0750 . Hepe08g1018 . . . . . . . . . . Csa02g01253 . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004876 2 1 2 1 2 1 0 1 1 1 1 1 2 1 1 2 1 1 2 1 1 2 2 0 1 1 1 3 1 1 38
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo04g00512 Blo_Chr04 FPKM 71.197182 72.641907 593.740601 604.660767 21.347349 23.916714 19.586563 1.508624 0.990107 0.718411