Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo04g00513 ATGGCGTCTATGTCCTCTCATGGCTCTAGCTCGTGGACTGCAAAGGATAACAAGGCATTTGAAAGGGCTTTAGCTGTGTATGATAAGGACACCCCTGACCGTTGGATTAATGTTGCCAAAGCTGTTGGAAATAAGACTGCCCAAGAAGTGCAAAGGCATTTCGAACTTCTTGTCGAAGACGTGAAACATATTGATTCCGGTCGTGTTCCTTTTCCCAATTACAAGTCACCTTCTGGGAATTCCTATACCTCCATTTATGATGCGGAAAAGAGAATCTTTGGCGACGGTGGAAGCAATGTTAGAGTAAAGCTCAACGGCGATGTTTTGAGGATTAAGTACTACGGTTTTCCTAGCGAGCAAGATGAAAGGTTTCGATGTTTTGGGAGTGGTAAAGAGGTGACAGATTTGGAGGCTATGTTTTGGCCATTGTCGGACAATTACAGGACTACAAGTGCTCTGAGCTGGTCTCATACAATGGAGCGCCTCAGTGCACTCGGAGTCATGAAAACTGTAGAACATAACATCGTCGTTGAGCTCTACTCCAACATTGCTTCCACCTTTGGTGAGGACTTCGTGGTTCGCGATCAACTTGTCGAATCATCGGTTGAGGGATGCAAGGTAGCAAGCGGAGCTTCAGTTTTGCATTACGGCGAGTTCATCCAATATGGAATATCAGATAGTGGGATTGAGTGA 693 45.45 MASMSSHGSSSWTAKDNKAFERALAVYDKDTPDRWINVAKAVGNKTAQEVQRHFELLVEDVKHIDSGRVPFPNYKSPSGNSYTSIYDAEKRIFGDGGSNVRVKLNGDVLRIKYYGFPSEQDERFRCFGSGKEVTDLEAMFWPLSDNYRTTSALSWSHTMERLSALGVMKTVEHNIVVELYSNIASTFGEDFVVRDQLVESSVEGCKVASGASVLHYGEFIQYGISDSGIE 230
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 4358437 4367226 + BLOR13425 Blo04g00513 59541

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo04g00513 230 Gene3D - 3 71 - -
Blo04g00513 230 SUPERFAMILY Homeodomain-like 10 66 IPR009057 -
Blo04g00513 230 ProSiteProfiles SANT domain profile. 7 62 IPR017884 -
Blo04g00513 230 CDD SANT 12 58 IPR001005 -
Blo04g00513 230 PANTHER MYB FAMILY TRANSCRIPTION FACTOR-RELATED 1 83 IPR044636 GO:0003700
Blo04g00513 230 PANTHER TRANSCRIPTION FACTOR MYB/SANT FAMILY-RELATED 1 83 - -
Blo04g00513 230 SMART sant 8 60 IPR001005 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo04g00513 - - - zju:107403626 137.887
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Blo04g00513 Blo13g00552 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo04g00513 Blo-Chr4:4358437 Blo13g00552 Blo-Chr13:27478286 5.54E-36 dispersed
Blo06g00822 Blo-Chr6:31474164 Blo04g00513 Blo-Chr4:4358437 1.72E-13 transposed
Blo07g00994 Blo-Chr7:29453608 Blo04g00513 Blo-Chr4:4358437 2.32E-64 transposed
Blo01g01563 Blo-Chr1:55391219 Blo04g00513 Blo-Chr4:4358437 7.19E-23 wgd
Blo12g00906 Blo-Chr12:27248526 Blo04g00513 Blo-Chr4:4358437 1.19E-24 wgd
Blo13g00551 Blo-Chr13:27471829 Blo04g00513 Blo-Chr4:4358437 2.89E-28 wgd
Blo17g00801 Blo-Chr17:25764580 Blo04g00513 Blo-Chr4:4358437 8.54E-25 wgd
Blo18g00814 Blo-Chr18:24108441 Blo04g00513 Blo-Chr4:4358437 5.85E-29 wgd
Blo04g00513 Blo-Chr4:4358437 Blo05g00797 Blo-Chr5:29270400 2.43E-19 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g598 . . . Bda08g01283 . Bpe12g00081 . Bma12g00518 Cmo19g00682 . . Cma20g00850 Car02g00260 . . Cpe04g00118 Cpe15g00545 Bhi05g01235 Tan02g0794 . . Hepe02g0503 . . Cla02g00516 Cam02g0528 Cec02g0530 Cco02g0538 Clacu02g0529 Cmu02g0523 . . . Cone3ag1164 Cone10ag0959 Lsi10g00367 . Chy11g00379 Cme01g01409 Blo04g00513 Blo13g00552 Bda15g00005 Bda14g00555 Bpe15g00865 . Bma03g00553 . Sed01g0302 Cmo02g00403 Cmo20g00859 . Cma19g00672 . Car19g00513 . . Bhi10g02012 Tan05g1311 Cmetu11g2150 . Hepe08g1017 . . . . . . . . . Lsi11g01107 Csa02g01255 Chy01g00780 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0019432 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo04g00513 Blo_Chr04 FPKM 0.777108 0.0 68.253471 59.846275 0.0 0.0 0.0 0.0 0.0 0.0