Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo04g00516 ATGTGTTTTTTCTTCTCCCTCGTTGCTGCGTTTCTTTTTGTGAAGTTCAGAGAAGAGGCGAAGGATGAATTCTCTGAAAGGATAAGCAAAATAGTTGAATCTGGGAAGAGTATAGGGATGGATGTAGGAGTTCTATGCATGAAAGGAGGGGACGGGAAGGACAGCTATGCTCGAAACTCGTCACTACAGAAAGTGGTGATGTTGAAGGTAAACCCTATCCTAGAAGAGAGTTTAACTGAGCTTTACACCAGAAAGTTCTCAGATTGTCTGGTAATGGCGGATTTGGGTTGTGGTCCAGGGCCCAACACGCTTCTTTTGGTGAGAGAGGTGATAGATATAATTCGTGAGAATTGCATGACGTTAAAGACGAAGCCTCCCGTTTTTCAAGTCTTTCTCAACGACCTTCCTGCAAATGATTTCAACTTCATTTTCAATTCACTTCCTAACTTTTACAAGAAACTCGAGAGAAAAAATGAAAATGAAATGGTCCAGTGTTTCGTTTCAGCAACTGTTGGATCATTCTATGGCAGACTCTTTCCTCCCAATTCTCTCCACTTTGTCCACTCTTGTTACTGCCTCCATTGGCGATCCAAGGTTCCTGAAGGGCTAGTGACAGAAAATGGAATAGCACTTAACAAAGGAAATATTTGCGTAGGGAAGAACAGCAATCAAAAGGTGATTCAACTATACTTGGATCTTTTCAAGAAAGACTTATCGTCTTTCTTGAGATCACGTTCTGCAGAGATTATCAAGGGTGGGGCTATGGTCCTAACCTTACTTGGCAGACAAAACGAAGCCACACCTTTGCCTGCAAACCTGTGCTTCAACATCTATGAATTACTTGCACGTTGCTTCCAAGACATGGTCCTCGAGGGGGAGATAGAGGAAGCAGAACTGGACTCTTTCAATATCCCTTTTTACGACCCAACAGCGGCAGAATTGAAGGAAGTGATCGAAAAGGAAGGGTCATTCAGCATAAGACGTCTGCAAATCTTCCAACTGAACTGGGATCCAAGGGGAGGCTCAAGCTGTAATCAACATTCAAGAGGGAAGTATGTGTCGACGATCCTAAGAGCCGTCACTGAACCTATTATTGCTTCCCATTTCGGACATCAAATCTTGGACAGTTTTTTCCAACGATTTGCCCAGAAGGTGGATGAATACGAGGAAGTTGGAATAGGGGAGTATACCAACCTAGTTGTTTCCCTGACAAAATCATGA 1221 43.16 MCFFFSLVAAFLFVKFREEAKDEFSERISKIVESGKSIGMDVGVLCMKGGDGKDSYARNSSLQKVVMLKVNPILEESLTELYTRKFSDCLVMADLGCGPGPNTLLLVREVIDIIRENCMTLKTKPPVFQVFLNDLPANDFNFIFNSLPNFYKKLERKNENEMVQCFVSATVGSFYGRLFPPNSLHFVHSCYCLHWRSKVPEGLVTENGIALNKGNICVGKNSNQKVIQLYLDLFKKDLSSFLRSRSAEIIKGGAMVLTLLGRQNEATPLPANLCFNIYELLARCFQDMVLEGEIEEAELDSFNIPFYDPTAAELKEVIEKEGSFSIRRLQIFQLNWDPRGGSSCNQHSRGKYVSTILRAVTEPIIASHFGHQILDSFFQRFAQKVDEYEEVGIGEYTNLVVSLTKS 406
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 4404930 4408560 + BLOR13428 Blo04g00516 59544

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo04g00516 406 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 43 405 IPR029063 -
Blo04g00516 406 PANTHER S-ADENOSYL-L-METHIONINE:CARBOXYL METHYLTRANSFERASE FAMILY PROTEIN 42 405 IPR005299 GO:0008168
Blo04g00516 406 PANTHER CARBOXYL METHYLTRANSFERASE, PUTATIVE-RELATED 42 405 - -
Blo04g00516 406 Gene3D - 44 388 IPR042086 -
Blo04g00516 406 Pfam SAM dependent carboxyl methyltransferase 78 405 IPR005299 GO:0008168
Blo04g00516 406 Gene3D Vaccinia Virus protein VP39 59 335 IPR029063 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo04g00516 - - K21483 mnt:21406961 388.652
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo04g00516 Blo-Chr4:4404930 Blo05g00807 Blo-Chr5:29566164 2.18E-98 dispersed
Blo04g00516 Blo-Chr4:4404930 Blo04g00517 Blo-Chr4:4417992 0 tandem
Blo03g00540 Blo-Chr3:20965778 Blo04g00516 Blo-Chr4:4404930 3.23E-54 transposed
Blo01g01575 Blo-Chr1:55503233 Blo04g00516 Blo-Chr4:4404930 2.17E-80 wgd
Blo12g00901 Blo-Chr12:27214861 Blo04g00516 Blo-Chr4:4404930 1.59E-59 wgd
Blo04g00516 Blo-Chr4:4404930 Blo05g00804 Blo-Chr5:29434105 7.52E-90 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g357 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Blo04g00516 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0016630 2 0 2 2 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 7
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo04g00516 Blo_Chr04 FPKM 1.260498 1.043482 0.999534 0.938695 1.526049 1.876992 1.534562 0.604344 0.704774 0.578809