Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo04g00519 ATGTGTGATACCATGTCCGGACCTCTTGATCGACATATCAAACCAGGTCTGTCTGACTTAGAAACCTCTGAGGATGAAAGGAAAACAAGGCTTGGATCTCTTAAGCAGAAGGCGATCAATGCCTCTACCAAGTTTAGACATTCCCTGCAAAGGAGAGGTCGGAGAAGCAGTCGGGTCATGTCCGTAGTCATTGAAGACGATATTGATGCAGAGGAATTACAGGCTGTGGATGCATTCCGCCAAGCACTTATATTGGAAGAGCTACTTCCCTCAAAACACGACGATCGTCATATGATGCTGAGATTTTTAAGGGCGAGAAAATTCGACATTGAGAAATCAAAGCAAATGTGGGCTGACATGCTTAATTGGAGGAAGGATTTCGGAGCTGATAATGTCATGGAGGATTTTGATTTTAAAGAAATTGATGAGGTCTTAAAGTACTATCCACAAGGCCATCACGGAGTGGATAAGGATGGGCGACCTGTTTACATCGAAAGACTAGGACAAGTCGATTCTACAAAGCTTCTTCAAGTGACAACTTTGGATCGATACATAAAGTACCATGTTCGGGAGTTCGAGAGAACTTTTGTCGATAAGTTCCCTGCCTGTTCCATTGCAGCCAACAAGCACATTGATCAGAGCACAACTATCTTAGACGTGCAAGGAGTGGGGCTTAAGAATTTTAATAAATCTGCAAGGGAACTTATCCAGCAACTTCAGAAGATCGATGGCGACAATTATCCAGAGACCCTGAACCGTATGTTCATCATCAATGCCGGATCTGGATTCAGACTTTTGTGGAACACTGTTAAGTCATTCCTCGATCCCAAGACAACTGCAAAGATCAATGTTCTGGGCAACAAATACCAGAGCAAATTGCTTGAAATTATTGATGCAAGTGAGCTTCCCGAATTCCTGGGTGGGACTTGTACTTGTGCGGATAAGGGCGGTTGCATGCGATCTGACAAGGGCCCCTGGAATGATCCTGAAATTATGAAGATGGTTCACAATGGAGAGCACAAATGCACCAGGAGAACCCTGTCTGGCATTGAAGAGAAGACGATTTCTGAAGACGATAAAGCACGCTCTAAGACATGCGATACTTTGAACTCGGATGCTACTCCTGAGGTTGCTGACGTGCCATGTCTCTCTCCAAGGCTCCCGAGGGAGCACACTGAGCATCCAAAACTGTTCCCTCTTCGTGAAGAGGTTCCCATTAAAAAGAAGTACGAACCGACCTTGGACTACAACTCATATGTTCCAATGGTCGACAAAGTTGTGGATTCAGCTTGGGCCCGTTGTTTATTTAAATCTGCAGGATACTTCCCTGTTCATGATTCTTGCGCGGTTACGGATGGATTTAGTAATCAAATAGTCGGTGGAATAATGGCATTTGTAATGGGGATTATCACCATGGTTCGGTTGACCAAAAACATGCCCAAGAAACTAACTGAAGCTGCCATATATGGCGGTTCCGTTTACTATGACGAAACGATGGTTAAAGGCCATCATCAGCTGGAAGGACCGACCATCGCAAGCGTCGATTACATGACAATGATGAAGCGGATGGCCGAGCTAGAAGAGAAAGTGACAGTTCTCAGCATGAAACCTCCGACAATGCCGCTTGACAAGGAGGAGATGCTAAACGATGCTTTAAGCCGAGTCACTAAGATGGAGCAAGAGCTATCTGAAGCCAAGAAGGCATTGGAGGACTCCCTTTCCCGACAGGAAGAGCTATTGGCATACATTGAAAAGAAGAAGAAGAAGAAGAAGCTGGTGAGCAAAAAGCTTCTTGCAATGACTCAATTGATTAAGTTTTAG 1821 44.76 MCDTMSGPLDRHIKPGLSDLETSEDERKTRLGSLKQKAINASTKFRHSLQRRGRRSSRVMSVVIEDDIDAEELQAVDAFRQALILEELLPSKHDDRHMMLRFLRARKFDIEKSKQMWADMLNWRKDFGADNVMEDFDFKEIDEVLKYYPQGHHGVDKDGRPVYIERLGQVDSTKLLQVTTLDRYIKYHVREFERTFVDKFPACSIAANKHIDQSTTILDVQGVGLKNFNKSARELIQQLQKIDGDNYPETLNRMFIINAGSGFRLLWNTVKSFLDPKTTAKINVLGNKYQSKLLEIIDASELPEFLGGTCTCADKGGCMRSDKGPWNDPEIMKMVHNGEHKCTRRTLSGIEEKTISEDDKARSKTCDTLNSDATPEVADVPCLSPRLPREHTEHPKLFPLREEVPIKKKYEPTLDYNSYVPMVDKVVDSAWARCLFKSAGYFPVHDSCAVTDGFSNQIVGGIMAFVMGIITMVRLTKNMPKKLTEAAIYGGSVYYDETMVKGHHQLEGPTIASVDYMTMMKRMAELEEKVTVLSMKPPTMPLDKEEMLNDALSRVTKMEQELSEAKKALEDSLSRQEELLAYIEKKKKKKKLVSKKLLAMTQLIKF 606
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 4450161 4453964 + BLOR13431 Blo04g00519 59547

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo04g00519 606 Gene3D - 62 127 - -
Blo04g00519 606 SMART CRAL_TRIO_N_2 95 120 IPR011074 -
Blo04g00519 606 ProSiteProfiles CRAL-TRIO lipid binding domain profile. 140 314 IPR001251 -
Blo04g00519 606 Gene3D - 128 339 IPR036865 -
Blo04g00519 606 SUPERFAMILY CRAL/TRIO N-terminal domain 66 136 IPR036273 -
Blo04g00519 606 PANTHER CRAL-TRIO DOMAIN-CONTAINING PROTEIN YKL091C-RELATED 19 592 - -
Blo04g00519 606 SUPERFAMILY CRAL/TRIO domain 140 335 IPR036865 -
Blo04g00519 606 Pfam CRAL/TRIO, N-terminal domain 93 119 IPR011074 -
Blo04g00519 606 PRINTS Cellular retinaldehyde-binding protein signature 300 309 - -
Blo04g00519 606 PRINTS Cellular retinaldehyde-binding protein signature 98 120 - -
Blo04g00519 606 PRINTS Cellular retinaldehyde-binding protein signature 267 286 - -
Blo04g00519 606 CDD SEC14 141 309 IPR001251 -
Blo04g00519 606 MobiDBLite consensus disorder prediction 1 26 - -
Blo04g00519 606 SMART sec14_4 140 311 IPR001251 -
Blo04g00519 606 PANTHER PHOSPHATIDYLINOSITOL/PHOSPHATIDYLCHOLINE TRANSFER PROTEIN SFH10-RELATED 19 592 - -
Blo04g00519 606 Pfam CRAL/TRIO domain 146 308 IPR001251 -
Blo04g00519 606 Coils Coil 548 586 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo04g00519 - - - jre:108986968 829.32
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo04g00519 Blo-Chr4:4450161 Blo13g00547 Blo-Chr13:27372990 0 dispersed
Blo14g00127 Blo-Chr14:917013 Blo04g00519 Blo-Chr4:4450161 3.54E-07 dispersed
Blo04g00519 Blo-Chr4:4450161 Blo04g00520 Blo-Chr4:4454564 0 tandem
Blo13g00546 Blo-Chr13:27354911 Blo04g00519 Blo-Chr4:4450161 0 wgd
Blo17g00773 Blo-Chr17:24644966 Blo04g00519 Blo-Chr4:4450161 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g351 . . . . . . . . . . Cma02g00384 Cma20g00835 Car02g00249 Car20g00721 . . . . . . . . . . . . . . . . . Cone12ag1161 Cone8ag1210 Cone3ag1174 Cone10ag0980 Lsi10g00390 . Chy11g00363 . Blo04g00519 . . . . . . . Sed01g0289 Cmo02g00390 Cmo20g00843 . . . . Cpe16g00255 Cpe05g01273 Bhi10g01982 Tan05g1281 Cmetu11g0971 . Hepe08g1000 . . . . . . . . . . Csa02g01280 . Cme11g00134
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005364 1 1 2 1 1 1 2 1 1 1 1 1 2 1 1 2 1 4 1 1 1 1 1 1 1 1 1 3 1 2 40
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo04g00519 Blo_Chr04 FPKM 28.405405 31.435869 48.433495 48.936687 49.712429 56.631569 45.502762 43.315453 42.978359 37.702011