Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo04g00520 ATGGGGTCTTTGAAAAAGAAAGCTATAAATGCGTCAACCAAATTTAAGCACTCTTTAAAGAAAAAGAGCAGTAGAAGAAAAAGTGATGGGCGGGTCAGCTCTGTTTCGATCGAGGATGTTCGGGATGCTGAGGAGCTGCAAGCTGTTGATGCATTTCGACAATCTTTGGTTATGGATGAATTGCTGCCTGAAAAATTTGATGATTATTATATGATGCTTAGGTTTTTGAAAGCAAGAAAGTTTGACATCGACAAAGCCAAGCATATGTGGGCTGACATGCTTCAGTGGAGAAAGGAATTTCGTGTTGACACCATTGATGAGGATTTTGAGTTCAAAGAAAAGAACGAAGTTTTGAAGTACTACCCTCATGGTTATCATGGCGTGGACAAGGAGGGAAGACCTATTTACTTTGAACAATTAGGAAAAGTTGATCCAAACAAACTCATGCAAGTTACCACTATGGATCGTTATATTAAATACCATGTGCAAGAGTTTGAGAAAACTTTTGCAATAAAGTTCCCGGCCTGTACAATTGCAGCAAAGAGGCACATAGACTCTAGCACCACAATTCTCGATGTCCATGGAGTGGGTCTTAAAAACTTGACTAAGTCTGCCCGGGAACTGATCATGCGACTCCAGAAAATTGATAGTGATAACTACCCAGAGACTCTTCATCAAATGTATATCATCAATGCTGGTCCAGGGTTCCGGATACTGTGGAACACTGTAAAGACTTTCCTTGATCCGCGCACCACATCAAAGATCCATGTTCTTGGTAACAAGTACCACAACAAATTGCTTGAAATAATTGATGCTGGCGAGTTGCCCGAATTTCTTGGTGGTACCTGTTCCTGCATAGACCAGGGAGGTTGCCTTCAATCAGACAAAGGGCCGTGGAAGAACCCGGAAATATTAAAGTTTGTTCTAAGTGGTGTGGCACGTTGCGGAAGGCAAGTTGTTAAAGTTCTAAATAGTGAAGGAAAAGTTGTTGCATATGCGAAGCCATATTATGGAACGGTGAAAGGCAGTGACACGTCCACTGCAGAGTCAGGATCCGAAGCTGAAGAAATTTCTTCTCCAAAAGTTTTCAAGAGTTATTCAAATCTTCGATTGACTCCTGTTCGTGAAGAAGCTAAGACTGTTGGTAAAGGAAGTTATGCTTGTAACTTCTCGGGTTATGATGAGTATATTCCCATGGTTGATAAAACTGTGGATTCTGGTTGGAAGAAGCCAGTGGCCCTTCAGCGACCAAGTGCTTCCAAAGGGGATCTTCCGCGTGATTCTCAAAAAACTCCTGATAGACTTCATACTCAAGCTTTGGTGGCACTTATTGCTTTCTTCATAACCCTTTATACACTTTTTCGATCGATGGTGGGCCGTGTTACTGGGAAAATTACTGATTTGCCAAGTGACCAAAGTTCTCCCACACTTCTGCATGATGAAACAACCAAGGAAAAATTCCGCCCCCCTTCACCTACCCCAGCATTTTCTGAGGCAGATATTCTCTCTTCTGTGCTTAAAAAGTTAAGTGTACTGGAGGAAAAGGTAGATAAACTCCAAGCAAAGCCATCTGAGATGCCTTATGAGAAAGAGGAGCTGCTAAACGCAGCTGTCTGTCGTGTGGATGCTTTAGAAGCTGAGTTGATTGCCACTAAGAAGTTTAATCGCCTTTTATTCACGGTACTTTGCTGCATTTGTGGCCAGGCTTTGTACGAAGCTTTAATGAGACAGGAAGAACTGCTTGCTTATATCGACAGCCAAGAAGAAGCCAAATTGCGGGTAATGTTTCAGATTGTCAGGTGCAAGAACATTACCAGGGCAAGTTTTCGAGCTAATCTCAACAGCGGGTCAAAGATGCTGTGA 1863 42.4 MGSLKKKAINASTKFKHSLKKKSSRRKSDGRVSSVSIEDVRDAEELQAVDAFRQSLVMDELLPEKFDDYYMMLRFLKARKFDIDKAKHMWADMLQWRKEFRVDTIDEDFEFKEKNEVLKYYPHGYHGVDKEGRPIYFEQLGKVDPNKLMQVTTMDRYIKYHVQEFEKTFAIKFPACTIAAKRHIDSSTTILDVHGVGLKNLTKSARELIMRLQKIDSDNYPETLHQMYIINAGPGFRILWNTVKTFLDPRTTSKIHVLGNKYHNKLLEIIDAGELPEFLGGTCSCIDQGGCLQSDKGPWKNPEILKFVLSGVARCGRQVVKVLNSEGKVVAYAKPYYGTVKGSDTSTAESGSEAEEISSPKVFKSYSNLRLTPVREEAKTVGKGSYACNFSGYDEYIPMVDKTVDSGWKKPVALQRPSASKGDLPRDSQKTPDRLHTQALVALIAFFITLYTLFRSMVGRVTGKITDLPSDQSSPTLLHDETTKEKFRPPSPTPAFSEADILSSVLKKLSVLEEKVDKLQAKPSEMPYEKEELLNAAVCRVDALEAELIATKKFNRLLFTVLCCICGQALYEALMRQEELLAYIDSQEEAKLRVMFQIVRCKNITRASFRANLNSGSKML 620
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 4454564 4460068 - BLOR13432 Blo04g00520 59548

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo04g00520 620 SMART sec14_4 113 284 IPR001251 -
Blo04g00520 620 Coils Coil 198 218 - -
Blo04g00520 620 SMART CRAL_TRIO_N_2 68 93 IPR011074 -
Blo04g00520 620 SUPERFAMILY CRAL/TRIO N-terminal domain 42 109 IPR036273 -
Blo04g00520 620 MobiDBLite consensus disorder prediction 10 27 - -
Blo04g00520 620 Pfam CRAL/TRIO, N-terminal domain 69 92 IPR011074 -
Blo04g00520 620 PANTHER PHOSPHATIDYLINOSITOL/PHOSPHATIDYLCHOLINE TRANSFER PROTEIN SFH8-LIKE 1 593 - -
Blo04g00520 620 Pfam CRAL/TRIO domain 119 281 IPR001251 -
Blo04g00520 620 SUPERFAMILY CRAL/TRIO domain 115 306 IPR036865 -
Blo04g00520 620 ProSiteProfiles CRAL-TRIO lipid binding domain profile. 113 287 IPR001251 -
Blo04g00520 620 CDD SEC14 114 282 IPR001251 -
Blo04g00520 620 MobiDBLite consensus disorder prediction 470 494 - -
Blo04g00520 620 PANTHER CRAL-TRIO DOMAIN-CONTAINING PROTEIN YKL091C-RELATED 1 593 - -
Blo04g00520 620 MobiDBLite consensus disorder prediction 1 31 - -
Blo04g00520 620 Coils Coil 502 522 - -
Blo04g00520 620 PRINTS Cellular retinaldehyde-binding protein signature 71 93 - -
Blo04g00520 620 PRINTS Cellular retinaldehyde-binding protein signature 240 259 - -
Blo04g00520 620 Gene3D - 11 100 - -
Blo04g00520 620 Gene3D - 101 310 IPR036865 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo04g00520 - - - tcc:18607739 877.47
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo03g00161 Blo-Chr3:4170932 Blo04g00520 Blo-Chr4:4454564 4.26E-112 dispersed
Blo04g00520 Blo-Chr4:4454564 Blo13g00546 Blo-Chr13:27354911 0 dispersed
Blo14g00041 Blo-Chr14:255895 Blo04g00520 Blo-Chr4:4454564 3.53E-16 dispersed
Blo04g00519 Blo-Chr4:4450161 Blo04g00520 Blo-Chr4:4454564 0 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g350 . . . . . . . . . . Cma02g00383 Cma20g00834 Car02g00248 Car20g00720 . . . . . . . . . . . . . . . . . Cone12ag1162 Cone8ag1211 Cone3ag1175 Cone10ag0981 Lsi10g00391 . Chy11g00362 Cme01g01117 Blo04g00520 . . . . . . . Sed01g0288 Cmo02g00389 Cmo20g00842 . . . . Cpe16g00256 Cpe05g01274 Bhi10g01981 Tan05g1280 Cmetu11g2218 . Hepe08g0999 . . . . . . . . . . Csa02g01281 . Cme11g00135
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004434 1 1 2 2 2 1 2 1 1 1 1 1 2 1 1 2 1 4 2 1 1 1 1 1 1 1 1 2 2 2 43
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo04g00520 Blo_Chr04 FPKM 2.699826 3.445878 5.409885 4.210822 16.303528 13.665649 11.152029 4.503045 4.508832 4.920559