Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo04g00521 ATGCTTCTAGTTTTTAATCAGGTTAATTGGATTGATGTAAGTCTTTTTGTAGCCCGTGTTGGAGGAAAATTTCAACCAAAGTGTAAACCACGGCCTAGAAGACAATCTTCTACATTGGTTTCTTCAGTATCGTGCAGTGAAACAAAGGAGATGGACAATGCCATATCTCAATCCGGTGAGATGAGAGAAAATGTAGCTATACATGAAGCATTGGTTACACCAGAGGTTCTTTCAAATGCAAACCATGAGAATGTTAAAAGTTCAAGCTTGGAATGTGTGAAGCCTGCATCCGAGATGGAGGGATTCAAAGATTCCATGACTTTCGATGTCACTGCCAATGGGCATTCTTCAAATCCTATCATTACAACTGCAGCGGGGGTGGTAGCTGCCGCTGAACTTAAATTAAGTCCTCGTGGGAGTATTCTTTTGAAAGAGCCGATAGGCAACGACTGTTTTACTCGCAAGTTTCAACCTACTATAAAGCCCTATTTGAGGAAGAAAACAGGCGTTTCAATTGTTTCCACCCTTGATAGTGATGGAACAGAGAATCTTAGTACATCAGCCTCTGTGGTCGAGACTGACCGTTGTGTTGACACTAGAAAAGATTCAGAGGTAGCCCTTGCCGCTCAATCTTCAACTACCTCAGAGATAATTGGGAGCAAAGCATCATTGACAGTAAATTGCAACGCAAGTGTTAAATTCTCTGATGATACAAGTAACTTGGGACTTTTGAATTATAGCCTTCCTAGTGCCTTAAGTGTTCAAAATGGCAAGTGTCCAGCTGTCAGCGGAAGCGAAGTAGTGTCTGATGGGAGTGGAGATTTTCTTTCTTGCCTTCACAAATCATCATTAGAGAATGTTGACTTGTTTTCAGGATTAGACTGTCTTGATGATTATCTTAATCAACCAGGAAGTGGTGAAGAAGGAATTTGTTGTAATCCAGCATCTACTATTGTTGGACCTTCACAGTGTGAGTCTGTTGAACAAAATCATACTTTTTCTGATCCAAACACTGCGAATGAAGCTCCGACATGCGATGCAGAAGTTTACCATTTTTCTGCTATGCCTGAAGAATCTGCTGTTAAGACCCGCGAAGGAATATCTTCAACAATTTCAAAGCTTCCTCTGAAGCATAAAAATTGTAGTGTGGGAAATGAATATGAGTGTGCCCCATCAACAAGGCAGCTAAGAAATTGGGTTCCACATCAACATGTTGACGATAGAGTAGATGAAGTTTGTGAAAACAGCAATAATGAAATAAATGATAGAGACTACGATGGTAATGACATGTTAGGAAGTAAACGGCAGGAAAAGGCTTTCAAAAAATCCAAAAAAGAAGCACCTGAAAATGAGAAACCGGTTCGAAAGCGTAAGGTTTCTGGTGAAGAAGCAAGAAGCGAGTCTGGGGGAAAAGGTCCTAAAAAGTTTCCACATGCAACTCGTCGGAAAAAAAGATATGGTAGTGACTCATTTGGTACCTACTTTGTTTCAGTTTCTGGGCGAGTTGATTCTGGTGTAAACAAGGAAGGTTCTTACGATGGAGAGGAAGAGTTTGCTTCTGAACAGCAAATAGGATCTGATAACGAGTATGAAGCTTACATTAAAGTCGATTCGAATTCCGAACACTTTAATTACCACACTTACATGAATAAAACACCCCGTGTAAAATGGTCTAAACAAGACACTGAACTTTTCTATGAGGCAGTTCGGCAATTTGGGACAGATTTTTACATGATAGAGCAGTTGTTTCCTGGTAGAACACATCATCAAATAAAATTGAAGTTTAAAAATGAGGAGCGCCAACATCCTTTACAGATTTCTGAGGCTTTGACCAGTCGTTCCAAAGATCATTCTCATTTTATATCACTGATGGAGCGGTTGCAGCAAGACTCTGCTCAGGAAAAATGCAAGTCTGATGCAGATGAATTGATTGAAGTTACAAGGATGGAATCAAAGTTGAATCCTGAAACTAATGAAGAAGCAGCAAAATCTGAGCTTGATGAGGAAAATAATATTAAGAATAAAGAAGGAAGCACTCGTGAAGTTCATAGCCCTTCAAAGTCTTATGACGAGGATGATGACCCTTATAAATGGAGTCAATATAACAGTGATTTGTAG 2118 39.8 MLLVFNQVNWIDVSLFVARVGGKFQPKCKPRPRRQSSTLVSSVSCSETKEMDNAISQSGEMRENVAIHEALVTPEVLSNANHENVKSSSLECVKPASEMEGFKDSMTFDVTANGHSSNPIITTAAGVVAAAELKLSPRGSILLKEPIGNDCFTRKFQPTIKPYLRKKTGVSIVSTLDSDGTENLSTSASVVETDRCVDTRKDSEVALAAQSSTTSEIIGSKASLTVNCNASVKFSDDTSNLGLLNYSLPSALSVQNGKCPAVSGSEVVSDGSGDFLSCLHKSSLENVDLFSGLDCLDDYLNQPGSGEEGICCNPASTIVGPSQCESVEQNHTFSDPNTANEAPTCDAEVYHFSAMPEESAVKTREGISSTISKLPLKHKNCSVGNEYECAPSTRQLRNWVPHQHVDDRVDEVCENSNNEINDRDYDGNDMLGSKRQEKAFKKSKKEAPENEKPVRKRKVSGEEARSESGGKGPKKFPHATRRKKRYGSDSFGTYFVSVSGRVDSGVNKEGSYDGEEEFASEQQIGSDNEYEAYIKVDSNSEHFNYHTYMNKTPRVKWSKQDTELFYEAVRQFGTDFYMIEQLFPGRTHHQIKLKFKNEERQHPLQISEALTSRSKDHSHFISLMERLQQDSAQEKCKSDADELIEVTRMESKLNPETNEEAAKSELDEENNIKNKEGSTREVHSPSKSYDEDDDPYKWSQYNSDL 705
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 4511551 4516316 + BLOR13433 Blo04g00521 59549

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo04g00521 705 ProSiteProfiles SANT domain profile. 556 603 IPR017884 -
Blo04g00521 705 SUPERFAMILY Homeodomain-like 556 603 IPR009057 -
Blo04g00521 705 CDD SANT 556 597 IPR001005 -
Blo04g00521 705 Pfam Myb DNA-binding like 547 631 IPR039467 -
Blo04g00521 705 MobiDBLite consensus disorder prediction 647 705 - -
Blo04g00521 705 PANTHER TRANSCRIPTION FACTOR TFIIIB COMPONENT B'' HOMOLOG 18 687 - -
Blo04g00521 705 MobiDBLite consensus disorder prediction 437 483 - -
Blo04g00521 705 Gene3D - 557 620 - -
Blo04g00521 705 MobiDBLite consensus disorder prediction 437 474 - -
Blo04g00521 705 MobiDBLite consensus disorder prediction 647 699 - -
Blo04g00521 705 SMART sant 553 601 IPR001005 -
Blo04g00521 705 PANTHER RNA POLYMERASE III TRANSCRIPTION INITIATION FACTOR B 18 687 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo04g00521 K15198 BDP1, TFC5; transcription factor TFIIIB component B'' - qsu:112020745 258.07
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g349 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone12ag1163 Cone8ag1212 . . . . . . Blo04g00521 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004585 1 4 1 1 1 1 2 1 1 1 1 1 2 2 1 2 1 2 2 1 1 1 1 1 1 1 1 3 2 1 42
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
12265 PF15963 Myb_DNA-bind_7 5.60E-28 CL0123 Blo TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo04g00521 Blo_Chr04 FPKM 1.86217 2.555267 2.797 4.180645 3.574782 5.489953 3.489201 5.628861 5.297892 4.251177