Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo04g00532 ATGAAGATCCAATGCGACGTTTGTGAGACAGCAGAGGCCTCAGTCTTCTGCACAGCCGATGAAGCCGCTCTCTGCAATGGCTGCGATCGCCATGTCCACCATGCAAACAAGCTCGCTAGCCAGCACAAGCGTTTCTCTCTCCTCCACCCCTCCTTCAAACAATCCCCTCTCTGTGACATCTGTCAGGAAAAGAGAGCTTTTGTTTTCTGTAAAGAAGACAGATCAGTTCTTTGCAGAGACTGCGATGTTTCGATCCACAAAGCCAACGAACACACCAAAAAGCACAATAGATTCCTTCTCACGGGAGTAAAGCTTTCTTCCTCATCTTCTTTCTACCCAACAACGTCAAACCCAGATGGCCGTTATGCGGCCATTGATGCTGAAACTGGAAGCTTCGAAACACAAGCTCAACGACCCAAGACAAATTTCAGCGAAAGCCATAATGCCGGGCCAGTTGGTGAGGGTTGCTCATATTCAACAAGCAGCATATCGGAGTATTTGACGGAGACGTTGCCCGGATGGTGCGTGGAGGATCTCCTTGATCCCTCAAGCTTTACCCATGGCTTCTGTAAGGACCAGTCATCGTTGAGGAACCTCCACCAATATTTTCTTCTCTCGATGAGATTCGAGAGAGAGAAGGAAGATGAGATCAAACAGCTACAACTAAGAAGCTGA 675 48.3 MKIQCDVCETAEASVFCTADEAALCNGCDRHVHHANKLASQHKRFSLLHPSFKQSPLCDICQEKRAFVFCKEDRSVLCRDCDVSIHKANEHTKKHNRFLLTGVKLSSSSSFYPTTSNPDGRYAAIDAETGSFETQAQRPKTNFSESHNAGPVGEGCSYSTSSISEYLTETLPGWCVEDLLDPSSFTHGFCKDQSSLRNLHQYFLLSMRFEREKEDEIKQLQLRS 224
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 4583064 4584273 + BLOR13444 Blo04g00532 59560

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo04g00532 224 Pfam B-box zinc finger 4 44 IPR000315 GO:0008270
Blo04g00532 224 Pfam B-box zinc finger 54 93 IPR000315 GO:0008270
Blo04g00532 224 PANTHER B-BOX ZINC FINGER PROTEIN 22 1 195 - -
Blo04g00532 224 PANTHER B-BOX ZINC FINGER PROTEIN 20 1 195 - -
Blo04g00532 224 SMART bboxneu5 4 47 IPR000315 GO:0008270
Blo04g00532 224 SMART bboxneu5 53 100 IPR000315 GO:0008270
Blo04g00532 224 CDD Bbox1_BBX-like 57 100 - -
Blo04g00532 224 CDD Bbox1_BBX-like 5 47 - -
Blo04g00532 224 Gene3D Classic Zinc Finger 1 97 - -
Blo04g00532 224 ProSiteProfiles Zinc finger B-box type profile. 1 47 IPR000315 GO:0008270
Blo04g00532 224 ProSiteProfiles Zinc finger B-box type profile. 53 100 IPR000315 GO:0008270
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo04g00532 - - - zju:107426654 251.136
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo04g00532 Blo-Chr4:4583064 Blo07g00980 Blo-Chr7:29282753 2.80E-43 dispersed
Blo01g01583 Blo-Chr1:55642228 Blo04g00532 Blo-Chr4:4583064 9.91E-55 wgd
Blo18g00789 Blo-Chr18:22814417 Blo04g00532 Blo-Chr4:4583064 1.81E-66 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g18 . . Bda06g00954 Bda08g00955 . . . Bma12g00543 . . . Cma20g00817 . Car20g00702 . Cpe04g00107 Cpe15g00559 . . . . . . . Cla02g00492 Cam02g0502 Cec02g0502 Cco02g0508 Clacu02g0505 Cmu02g0501 Cre02g0833 . . Cone3ag1218 Cone10ag1103 Lsi10g00408 Csa07g00027 Chy11g00343 Cme01g01353 Blo04g00532 . . Bda14g00574 Bpe15g00849 Bpe05g00323 . . Sed05g3539 . Cmo20g00825 . Cma19g00687 . . Cpe16g00269 . Bhi10g01956 Tan05g1250 Cmetu11g0516 . Hepe08g0983 . . . . . . . . . . Csa02g01300 . Cme11g00162
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Blo16g00936 . 175 518 C2C2-CO-like Transcription Factor Family AT5G57660 53.1 6.2e-65 245.0
Blo04g00532 . 1 191 C2C2-CO-like Transcription Factor Family AT1G75540 56.5 3.5e-54 209.1
Blo07g00980 . 1 295 C2C2-CO-like Transcription Factor Family AT1G78600 51.2 3.3e-73 272.3
Blo06g00321 CCT,ECH 1 177 C2C2-CO-like Transcription Factor Family AT2G21320 62.1 2.2e-52 202.2
Blo16g00074 BCT,CCT,ECH 1 181 C2C2-CO-like Transcription Factor Family AT2G21320 56.4 1.2e-50 196.4
Blo06g00321 CCT,ECH 1 176 C2C2-CO-like Transcription Factor Family AT4G38960 62.1 1.3e-53 206.5
Blo16g00074 BCT,CCT,ECH 1 179 C2C2-CO-like Transcription Factor Family AT4G38960 58.1 8.2e-53 203.8
Blo04g00894 BCT,CCT,ECH 1 143 C2C2-CO-like Transcription Factor Family AT4G38960 60.1 9.1e-44 173.7
Blo04g00532 . 1 184 C2C2-CO-like Transcription Factor Family AT4G39070 55.4 3.4e-54 208.8
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000846 4 5 1 2 4 3 4 3 3 3 3 3 4 3 3 4 3 2 4 3 3 3 3 4 3 3 2 3 2 0 90
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
12267 PF00643 zf-B_box 1.10E-07 No_clan Blo TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo04g00532 Blo_Chr04 FPKM 50.6992 52.327274 42.212044 45.49152 38.297302 42.292957 47.739357 30.885107 31.157633 41.702507