Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo04g00532 ATGAAGATCCAATGCGACGTTTGTGAGACAGCAGAGGCCTCAGTCTTCTGCACAGCCGATGAAGCCGCTCTCTGCAATGGCTGCGATCGCCATGTCCACCATGCAAACAAGCTCGCTAGCCAGCACAAGCGTTTCTCTCTCCTCCACCCCTCCTTCAAACAATCCCCTCTCTGTGACATCTGTCAGGAAAAGAGAGCTTTTGTTTTCTGTAAAGAAGACAGATCAGTTCTTTGCAGAGACTGCGATGTTTCGATCCACAAAGCCAACGAACACACCAAAAAGCACAATAGATTCCTTCTCACGGGAGTAAAGCTTTCTTCCTCATCTTCTTTCTACCCAACAACGTCAAACCCAGATGGCCGTTATGCGGCCATTGATGCTGAAACTGGAAGCTTCGAAACACAAGCTCAACGACCCAAGACAAATTTCAGCGAAAGCCATAATGCCGGGCCAGTTGGTGAGGGTTGCTCATATTCAACAAGCAGCATATCGGAGTATTTGACGGAGACGTTGCCCGGATGGTGCGTGGAGGATCTCCTTGATCCCTCAAGCTTTACCCATGGCTTCTGTAAGGACCAGTCATCGTTGAGGAACCTCCACCAATATTTTCTTCTCTCGATGAGATTCGAGAGAGAGAAGGAAGATGAGATCAAACAGCTACAACTAAGAAGCTGA 675 48.3 MKIQCDVCETAEASVFCTADEAALCNGCDRHVHHANKLASQHKRFSLLHPSFKQSPLCDICQEKRAFVFCKEDRSVLCRDCDVSIHKANEHTKKHNRFLLTGVKLSSSSSFYPTTSNPDGRYAAIDAETGSFETQAQRPKTNFSESHNAGPVGEGCSYSTSSISEYLTETLPGWCVEDLLDPSSFTHGFCKDQSSLRNLHQYFLLSMRFEREKEDEIKQLQLRS 224
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 4583064 4584273 + BLOR13444 Blo04g00532 59560
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Blo04g00532 224 Pfam B-box zinc finger 4 44 IPR000315 GO:0008270
Blo04g00532 224 Pfam B-box zinc finger 54 93 IPR000315 GO:0008270
Blo04g00532 224 PANTHER B-BOX ZINC FINGER PROTEIN 22 1 195 - -
Blo04g00532 224 PANTHER B-BOX ZINC FINGER PROTEIN 20 1 195 - -
Blo04g00532 224 SMART bboxneu5 4 47 IPR000315 GO:0008270
Blo04g00532 224 SMART bboxneu5 53 100 IPR000315 GO:0008270
Blo04g00532 224 CDD Bbox1_BBX-like 57 100 - -
Blo04g00532 224 CDD Bbox1_BBX-like 5 47 - -
Blo04g00532 224 Gene3D Classic Zinc Finger 1 97 - -
Blo04g00532 224 ProSiteProfiles Zinc finger B-box type profile. 1 47 IPR000315 GO:0008270
Blo04g00532 224 ProSiteProfiles Zinc finger B-box type profile. 53 100 IPR000315 GO:0008270
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo04g00532 Blo-Chr4:4583064 Blo07g00980 Blo-Chr7:29282753 2.80E-43 dispersed
Blo01g01583 Blo-Chr1:55642228 Blo04g00532 Blo-Chr4:4583064 9.91E-55 wgd
Blo18g00789 Blo-Chr18:22814417 Blo04g00532 Blo-Chr4:4583064 1.81E-66 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
12267 PF00643 zf-B_box 1.10E-07 No_clan Blo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo04g00532 - - zju:107426654 251.136