Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo04g00534 ATGGCTGCTACGTATCCCAGAGGTTGTTTAGACCCTGAAGCGCCGGAATTCTTCCCCGGTATTTTAACTTCTTCTTTTGTCTCCCCTCCTTGTTCCTCTCTTACAACAGACCCTTTCTTCTACTACCAATCTCTTCCACCTTTTCAGCTCACCTTATCTCCTCATTTCTATTATACGTTTAACCTCTCGACCCACAATTTTCCTCACTCGGCTGCACCGCCACCACCCCCTCAATCGCACAGCTATCTGCAGAGTAAACCCTATGTCGAGGTCGAGGAAAAAATGTCGGGTCGAAAGGACGTGGAGAGGAAGTATAGGAATGATAGCTCTGGTGGAAGTGACGTTTGTGAAAATAGAGGAGAGAAAGGAAAAGTTGGGAAAGAACACAAGGTGAAGTTAAGAAGCGTAGATGATCATCGGAAAACAAATGTGAAATCCTTCGCTGCTAGAAAGAAGAAAGAGGGTTCCTCCGTTGAGCCCGAGCCTGTGGAAAAAGGTGGAAATAACACAACTGTGATGATCAGAAACATACCCAGCAAATACACGCGTGATATATTGATGAAGTTTCTCGATCAACACTGCATGAAGCAGAACGAACAGCTGGAAAAACACAGTTCCGATGATCAAATAGAAGATGACCCTATATCAGCGTTCGATTTCCTCTATTTGCCAATAGATTTTCATACTGGAATGAACAAAGGCTATGCCTTCGTCAACTTCACAAGTTCAAAGGCAATGTGGAAGTTTTACGAGGAAACCAATAATCAGAATTGGGATCTCTTTCATTCCAACAAGATACGCCAAATAGCCCATGCTAGGCTACAGGGTAAGGCAGAGCTGGTGAGACACTTCGAAAACATGGGGTTTCCTTGCGATTCAGATGAAGTCCTACCAGTTTACTTCAGCCCCCCGCGCGACGGATCAAGGGAGTGGGTGGAGCTAACGACTGTAGGAAGAAGAATAGGGCGCAGGAAGTACAAATCAACGCATTACTCTAACACCAACCAAATCTAA 1014 44.97 MAATYPRGCLDPEAPEFFPGILTSSFVSPPCSSLTTDPFFYYQSLPPFQLTLSPHFYYTFNLSTHNFPHSAAPPPPPQSHSYLQSKPYVEVEEKMSGRKDVERKYRNDSSGGSDVCENRGEKGKVGKEHKVKLRSVDDHRKTNVKSFAARKKKEGSSVEPEPVEKGGNNTTVMIRNIPSKYTRDILMKFLDQHCMKQNEQLEKHSSDDQIEDDPISAFDFLYLPIDFHTGMNKGYAFVNFTSSKAMWKFYEETNNQNWDLFHSNKIRQIAHARLQGKAELVRHFENMGFPCDSDEVLPVYFSPPRDGSREWVELTTVGRRIGRRKYKSTHYSNTNQI 337
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 4595995 4597624 + BLOR13446 Blo04g00534 59562

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo04g00534 337 PANTHER RNA BINDING PROTEIN 14 315 - -
Blo04g00534 337 PANTHER MEI2 C-TERMINAL RRM ONLY LIKE 1 14 315 - -
Blo04g00534 337 MobiDBLite consensus disorder prediction 92 170 - -
Blo04g00534 337 MobiDBLite consensus disorder prediction 92 160 - -
Blo04g00534 337 Pfam RNA recognition motif 2 208 284 IPR007201 -
Blo04g00534 337 SUPERFAMILY RNA-binding domain, RBD 164 258 IPR035979 GO:0003676
Blo04g00534 337 Gene3D - 90 277 IPR012677 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo04g00534 - - - zju:112492748 238.81
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo04g00534 Blo-Chr4:4595995 Blo06g00838 Blo-Chr6:31622888 1.03E-42 dispersed
Blo04g00534 Blo-Chr4:4595995 Blo13g00305 Blo-Chr13:16432553 9.04E-25 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g21 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone12ag1180 Cone8ag1225 . . . . . . Blo04g00534 . . . Bpe15g00847 . Bma03g00569 . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0016262 0 0 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 1 0 0 0 0 1 0 0 1 8
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo04g00534 Blo_Chr04 FPKM 19.66818 21.199385 378.867859 365.030609 2052.202393 2287.442871 2011.019897 141.936844 160.11113 131.999863