Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo04g00538 ATGGAAGGCGATGAAGACGAGCCTTCGAATGTTAGTGGGCCTTCTCTACGATTCGAGGACGACTTGGTTGCTAACCGTGACGAGTGTGCGGAGTTTCGTAGCTCCGAAGTACCGTGCGAGTCGGAGGTTTTACCCCTGGCGTCGGAGTCGCAGTCTGTAGCTACACGAATTTCTGGGGAGGATGATATTGATGTTGTTTTGGGGGAGGAGAGTGTGGAAGTGGATGCGGATTTAGTGACGGAGAATAGGGATCTGGCGGAGGAAATAAAGATGGCGAGGGAGGAGGTTGCTGGTGATTTTGTAGAAGATATGGGGGGAGAGATAGAAGAGAAGGTTAGAACTTGTGTTACGGAGGAGCCTTTGGAAAGGCAAAATCTGGCGTCACATTCTGCACAGGAAGTAGATGTGCATGGAATTGGTGTATTTGATGCAATGGAGTATACAGTGGGGGAGACTTTTGAGATTAGAGATGATGACGTTCAAGAGAAAGCTGAGGTAACTGGCATTTTGGATGAGAAGGAAGACACTAAGGAGGCTGGCGAAAATGAAGCTGTGGAAGAAACAACCATTGCCAATATGACATATGCGGTGCAGGATATAGAGGAAGTTTATAAGACTAATGTTGTGGAGGAGACTGTGATCACAGTGAAGGAGGAAGTGCCTGTCCTTGCGGAAGTGACTAAAGAGGTGGAGGAGTTGGGTGTGACTGATGAATTCAAAGACTCAGGGTTTGTGAGTTTCGGTTATGCTCAGGATATTGATGCAGTTAATTTGACAAATGTGACCGATGTGGGATTGAAGAGGGATGCACCAAAAGGTGCAGAAGATGCTGTGGTGGCTAGTGCTGCTGCCGACGGAATGGATATTAAAGATAAGTCTGCCATTGTTCACAATATGGAGGCAGTTTATGTGATTAACGTGACAGAGGAGAACCAGGTAACAGATGATGGTGATGTGCCTGACTTTGAAAAAGAGGTGGAAGAGATTGAGACTGTCAGAGTTGTAGATGGAGAAGTGGAAGTGGAAACGGCGGATGCATCTGATAATGTTAATGATACTGAGACAGTTTCTGTGACTAATGTGATGGAGAACACAGTAGCAGTCGAAGGGAAAGCGCCTGAAATGTTAGAAGATGCAGAATATGTAAAAGACGAATTTTCTTCCTTAAAGGAGTTTCATTTAGCTGTTCCATTGCAGGATTCAGAGCAGGAAGTGTACACAGATAAATCCAATGAAACTGAGACAAAGGAGAAGATGACATATGGTGTAAATGATGTCGAAGAAGATAAAGCTGAGGATGAGATGGAAAATATGGCAGATGATACTGCGGAGGATGAGATGGACAACATGGAAAATGATATTGCGCATATGGAAGAGATGACTAACATGGGGGAAGAGACTGTAGGAGCAATTGGTATGATTAATGTCACAGATGAGATTGTTGAGGCTGAAGAGATGGATGTGTATGTACCTGATCTGACAGCTGATGAGGCTCAGGAAATGGAGCTGTTGGATGAGGTCGAGGAGGCTGGTAGGGGTAGCACAGGTGGTAAGAGGAAGCGAGGTAGGAATTCTAAGGCTCCAGTAAGAACGCCGTCAAAGAAGAAAGTTGAAGAGGATGTTTGCTTCATTTGCTTTGATGGGGGTGACCTTGTGCTCTGTGATCGCAGGGGTTGCCCTAAAGCGTATCATCCTTCATGCGTCAACCGAGATGAAGCATTTTTCCGAGCTAAGGGTAGATGGAATTGTGGTTGGCACCTTTGTAGCAATTGTGGGAAAACTGCCAATTATATGTGTTTGACATGTACATTTTCCTTGTGCAAAAGTTGTATCAAGGATGCAGTTATCTTCTGTGTGAGAGGGAACAAAGGCTTCTGTGAGACTTGCATGAAGACCGTCATGTTGATTGAAAAGAATGAGCAGGGGAGCAAAGAAACGAGTCAAGTTGATTTTAATGACAAAAGTAGCTGGGAGTATCTTTTTAAAGACTACTGGTCAGATGTAAAACAAAAGCTGTCTCTAACATTTGATGAGCTAACTCAGGCAAAGGTTCCATGGAAAGGATCTGATATGCTATCTAGTAAGCAAGAATCTCCTCATGAACTTGATACTAAAGTGAATAGAGAATCAGATTCACATAGTTCTGGTAATCTTGAGTCAAATGTCTCCAAAAGGAAAAAACCTAAGAAACAATTGAAGTCGCGCTCGAAAGAGAGGGATTCATCTCACTCTTTGATAGCAACTAGTGTGGAAGGTGTATCCGCAGCTGAGAGGATTGAGTGGGCATCAAAAGAGCTCTTAGAATTCGTTATGCACATGAGGAATGGGGACAGATCGGTTTTATCTCAGTTTGATGTGCAGGCTCTCTTGCTAGAATATATTAAGAGAAACAAACTACGTGATCCTCGTCGTAAAAGTCAAATTGTTTGTGATATAAGGTTGGAGACTTTGTTTGGCAAACCACGGGTGGGACATTTTGAAATGTTGAAGCTTCTTGAGTCCCACTTTCTTTTGAAAGAGGATGCCCTGGCTGATGATCATCAAGGGAGTGTGGTGGATACTGAGTCTAGTCAAATGGAGGTGGATGGAAACACTGATTCTGTAGTTAAGGCTGGTAAAGATAGGAAACGGAAGGGACGCAAAAAGAGTGATGGGAAAGGACTTCAATATAATGTTGATGATTATGCAGCCATTGATAGTCATAACATTAATTTGATTTACTTAAGACGTAATTTGGTTGAAGAACTTATAGATGATGTGGAAAATTTTCATAATAAGGTTGTTGGTACATTTGTTAGGATAAGGATATCAGGTAGTGCTCAAAAGCAAGATTTGTATAGGCTGGTCCAAGTTGTCGGTACATGCAAAGCAGGTGAACCTTATAAAGTTGGTAAAAAGATGACTAATATCTTGCTAGAGATTTTGAATTTAAACAAGACAGAGATCATATCATCAGATATCATATCAAATCAGGAGTTCACTGAGGATGAGTGCAAGCGGCTCCGTCAGAGCATCAAATGCGGACTTCTTAGTAGGCTGACTGTGGGTGACATTCAAGAGAAAGCCATGGCATTACAAGAAGTTCGGGTTAAGGATTGGCTAGAAGCAGAGATTGTTCGACTCAGTCATCTTCGTGATCGAGCTAGTGAAAAAGGCCGTAGAAAGGAATATCCTTTTCTCATTCTGAAAACACCTGAAGAGCGACAAAGAAGATTGGAGGAAATTGCAGAAATTCATTCGGACCCAAATATGGATCCAAGTCATGAATCTGAGGAAGAGGAAGAAACCTACATTAAACCCAGAGGCAATAATGGCTTTGGAAGAAGGGGGAAGGAGATGATTTCTCCACGTAAAGGAGGCTCCACTTTGAGTGATAACTGGAGTGGGATGAGGAATCTTTCCAACACGAATATGGAATCAAATAGGAACTCGCTTGGCAAAAGCTATTCTAACAAAGTTGATGATGCAACTGGCAGCAGCGAGATTGCAAATGATTATACCAGGAATCAAGGTAGAGAAACGAACATTCAACTGCCAATCAGTGAGGAAAAGAGACAACCTTATTCTGTCACAGAAATCAGTCCTAGGAAGACGCAATCCATTGTTGAATCTCATTTGTCTTCTGCTCGTGAGTCGCAAATTTCAGCAGCGCCCCTGTCTACTGTAGCAAAGCAGACTGAGAGTAAAATTAACGAAGCAGAAAAAATGTGGCACTACAAAGATCCTTCTGGGAAAGTTCAGGGACCATTTTCTATCGTTCAGCTACGCAAGTGGAGCACCACTGGTTACTTTCCTGCTGACTTGAGAATTTGGAATAGTGCTGAGAAGGAAGATGGTTCTATACTTTTGACTGATGCATTGGCAGGAAAATTCCAGAAAGATTTATTGTTGATGGATAACAGCATACCGAAGGCTGAAATGGCACGGAGTTCGAATTTGCTGTCATATTCGGGGAGATCTCAAGGACTTCCTTTACAACATATTGTCGAAAGTCGGAGTCATGGTGCTTCAGATACTCGCAGCAATCCGAGTTCTTCAGGCCCTTCTGCGGCAGAAAGTTTTAGATTTCAAAATGAAGTTAGTTCTACAGTAAGGGTACCTCCTTCAATCGAGGTTCCAAAATATTCTGTGGATGGACGGACTTCCGACTTTGGTATCAGAAACGAGTCCACCAACCTTCCTTCACCTACTCCTAGTTCAGGTGGAGCTAAGGGGCATTCTCCCCTGAATCCTCCATTTTCAGAATCCAATTCATTTCCTGGAGGAAATCCGGGACTGCAACATTCTGCCGTCTTTACAAGAGATGGTGCTGCTAGAAGCTCTGAAGGGCAGGACAACAGCGTGGGTTTAGGCTCGTTTAGGAACTTCCCAGTGGGCCCCATGTCTAATCTGCCTCCGTCCAGTGCATGGAGACCTCCTGTACAGGGCAGTCAGCCAAACATGCAGTCTCCAGCTCCCACCAATTTACCATGGGGTATGGGGTTAGAGAATCAGAACAACACTGGGTGGGTTCCCACGCATCAGGGAAATCCAAATGTTGGCTGGACCGGTCCCGTACCTGCGGTTGTCAACCCAAATTGGGCCGCCCAAGGCCCACCAGCTGGAAATGTAAATCAAGTATGGACTGCTCCGCCTCAAGGGCCAACTCCTGGAAATGTGGTTCCTAGTTGGGGGCCGGGCACATATAATCAGCAGCAGCCGCCGCCACCACCTGCAAATGCAAACACTGGTTGGATTCCTCCGCCGGCAAATCCTAATCCTGGGTGGGGGCCACCTCCGGGAAACGTGGGTGTGGGAGGAAATGAACACAGGGATTGGGGAAGACAGCCAGCTTTCAATGGGGGAGGAGGGTTTCCAAGGCCACCGTTCAAAGGACAGAGAGTGTGCAAGTACCACGAGGGTGGACGCTGCAAGAAAGGAGCTGCTTGCGATTATCTGCACACTTGA 4947 44.73 MEGDEDEPSNVSGPSLRFEDDLVANRDECAEFRSSEVPCESEVLPLASESQSVATRISGEDDIDVVLGEESVEVDADLVTENRDLAEEIKMAREEVAGDFVEDMGGEIEEKVRTCVTEEPLERQNLASHSAQEVDVHGIGVFDAMEYTVGETFEIRDDDVQEKAEVTGILDEKEDTKEAGENEAVEETTIANMTYAVQDIEEVYKTNVVEETVITVKEEVPVLAEVTKEVEELGVTDEFKDSGFVSFGYAQDIDAVNLTNVTDVGLKRDAPKGAEDAVVASAAADGMDIKDKSAIVHNMEAVYVINVTEENQVTDDGDVPDFEKEVEEIETVRVVDGEVEVETADASDNVNDTETVSVTNVMENTVAVEGKAPEMLEDAEYVKDEFSSLKEFHLAVPLQDSEQEVYTDKSNETETKEKMTYGVNDVEEDKAEDEMENMADDTAEDEMDNMENDIAHMEEMTNMGEETVGAIGMINVTDEIVEAEEMDVYVPDLTADEAQEMELLDEVEEAGRGSTGGKRKRGRNSKAPVRTPSKKKVEEDVCFICFDGGDLVLCDRRGCPKAYHPSCVNRDEAFFRAKGRWNCGWHLCSNCGKTANYMCLTCTFSLCKSCIKDAVIFCVRGNKGFCETCMKTVMLIEKNEQGSKETSQVDFNDKSSWEYLFKDYWSDVKQKLSLTFDELTQAKVPWKGSDMLSSKQESPHELDTKVNRESDSHSSGNLESNVSKRKKPKKQLKSRSKERDSSHSLIATSVEGVSAAERIEWASKELLEFVMHMRNGDRSVLSQFDVQALLLEYIKRNKLRDPRRKSQIVCDIRLETLFGKPRVGHFEMLKLLESHFLLKEDALADDHQGSVVDTESSQMEVDGNTDSVVKAGKDRKRKGRKKSDGKGLQYNVDDYAAIDSHNINLIYLRRNLVEELIDDVENFHNKVVGTFVRIRISGSAQKQDLYRLVQVVGTCKAGEPYKVGKKMTNILLEILNLNKTEIISSDIISNQEFTEDECKRLRQSIKCGLLSRLTVGDIQEKAMALQEVRVKDWLEAEIVRLSHLRDRASEKGRRKEYPFLILKTPEERQRRLEEIAEIHSDPNMDPSHESEEEEETYIKPRGNNGFGRRGKEMISPRKGGSTLSDNWSGMRNLSNTNMESNRNSLGKSYSNKVDDATGSSEIANDYTRNQGRETNIQLPISEEKRQPYSVTEISPRKTQSIVESHLSSARESQISAAPLSTVAKQTESKINEAEKMWHYKDPSGKVQGPFSIVQLRKWSTTGYFPADLRIWNSAEKEDGSILLTDALAGKFQKDLLLMDNSIPKAEMARSSNLLSYSGRSQGLPLQHIVESRSHGASDTRSNPSSSGPSAAESFRFQNEVSSTVRVPPSIEVPKYSVDGRTSDFGIRNESTNLPSPTPSSGGAKGHSPLNPPFSESNSFPGGNPGLQHSAVFTRDGAARSSEGQDNSVGLGSFRNFPVGPMSNLPPSSAWRPPVQGSQPNMQSPAPTNLPWGMGLENQNNTGWVPTHQGNPNVGWTGPVPAVVNPNWAAQGPPAGNVNQVWTAPPQGPTPGNVVPSWGPGTYNQQQPPPPPANANTGWIPPPANPNPGWGPPPGNVGVGGNEHRDWGRQPAFNGGGGFPRPPFKGQRVCKYHEGGRCKKGAACDYLHT 1648
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 4629142 4638321 - BLOR13450 Blo04g00538 59566

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo04g00538 1648 ProSiteProfiles Zinc finger PHD-type profile. 539 605 IPR019787 -
Blo04g00538 1648 MobiDBLite consensus disorder prediction 1373 1486 - -
Blo04g00538 1648 MobiDBLite consensus disorder prediction 689 743 - -
Blo04g00538 1648 MobiDBLite consensus disorder prediction 1080 1199 - -
Blo04g00538 1648 MobiDBLite consensus disorder prediction 1562 1592 - -
Blo04g00538 1648 ProSiteProfiles Zinc finger C3H1-type profile. 1623 1648 IPR000571 GO:0046872
Blo04g00538 1648 SMART gyf_5 1235 1290 IPR003169 GO:0005515
Blo04g00538 1648 MobiDBLite consensus disorder prediction 853 885 - -
Blo04g00538 1648 Pfam Plus-3 domain 902 1005 IPR004343 GO:0003677
Blo04g00538 1648 Pfam GYF domain 1237 1275 IPR003169 GO:0005515
Blo04g00538 1648 PANTHER UNCHARACTERIZED 1352 1648 - -
Blo04g00538 1648 PANTHER UNCHARACTERIZED 324 1399 - -
Blo04g00538 1648 SUPERFAMILY Plus3-like 898 1027 IPR036128 GO:0003677
Blo04g00538 1648 ProSitePatterns Zinc finger PHD-type signature. 542 602 IPR019786 -
Blo04g00538 1648 CDD SWIB-MDM2_like 761 836 - -
Blo04g00538 1648 Pfam SWIB/MDM2 domain 763 836 IPR003121 -
Blo04g00538 1648 SMART PHD_3 541 587 IPR001965 -
Blo04g00538 1648 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 19 1352 1648 - -
Blo04g00538 1648 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 19 324 1399 - -
Blo04g00538 1648 MobiDBLite consensus disorder prediction 1559 1623 - -
Blo04g00538 1648 CDD PHD5_NSD 541 586 - -
Blo04g00538 1648 ProSiteProfiles SWIB/MDM2 domain profile. 755 838 IPR003121 -
Blo04g00538 1648 MobiDBLite consensus disorder prediction 1330 1353 - -
Blo04g00538 1648 SUPERFAMILY GYF domain 1228 1287 IPR035445 -
Blo04g00538 1648 CDD GYF 1234 1289 IPR003169 GO:0005515
Blo04g00538 1648 MobiDBLite consensus disorder prediction 507 531 - -
Blo04g00538 1648 SUPERFAMILY FYVE/PHD zinc finger 538 596 IPR011011 -
Blo04g00538 1648 MobiDBLite consensus disorder prediction 694 712 - -
Blo04g00538 1648 MobiDBLite consensus disorder prediction 1335 1353 - -
Blo04g00538 1648 Gene3D - 1235 1293 IPR035445 -
Blo04g00538 1648 SMART swib_2 756 841 IPR019835 -
Blo04g00538 1648 Gene3D SWIB/MDM2 domain 750 844 IPR036885 -
Blo04g00538 1648 Gene3D - 899 1028 IPR036128 GO:0003677
Blo04g00538 1648 SUPERFAMILY SWIB/MDM2 domain 757 837 IPR036885 -
Blo04g00538 1648 CDD Bbox1 587 613 - -
Blo04g00538 1648 ProSiteProfiles Plus3 domain profile. 897 1030 IPR004343 GO:0003677
Blo04g00538 1648 MobiDBLite consensus disorder prediction 1080 1099 - -
Blo04g00538 1648 SMART rtf1 897 1007 IPR004343 GO:0003677
Blo04g00538 1648 Coils Coil 440 460 - -
Blo04g00538 1648 MobiDBLite consensus disorder prediction 1468 1486 - -
Blo04g00538 1648 MobiDBLite consensus disorder prediction 1383 1424 - -
Blo04g00538 1648 MobiDBLite consensus disorder prediction 1119 1199 - -
Blo04g00538 1648 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 529 634 IPR013083 -
Blo04g00538 1648 ProSiteProfiles GYF domain profile. 1234 1288 IPR003169 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo04g00538 - - - pavi:110750337 1203.35
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo04g00538 Blo-Chr4:4629142 Blo16g00072 Blo-Chr16:2065051 2.87E-08 dispersed
Blo04g00538 Blo-Chr4:4629142 Blo04g00896 Blo-Chr4:10335718 0 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g38 . . . . . . . . Cmo19g00701 . . . . . Sed05g2290 Cpe04g00103 Cpe15g00561 Bhi05g01262 Tan02g0757 Cmetu01g2730 . . . . Cla02g00488 Cam02g0497 Cec02g0498 Cco02g0503 Clacu02g0501 Cmu02g0496 Cre02g0829 Cone12ag1185 Cone8ag1230 . . . Csa07g00034 . Cme01g01347 Blo04g00538 . . . Bpe15g00843 . . . . . . . . . Car19g00533 . . . . . . . . . Cla02g01127 Cam02g1202 Cec02g1205 Cco02g1255 Clacu02g1191 Cmu02g1153 Cre02g1463 . . Chy01g00747 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007589 1 1 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 1 1 36
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
12268 PF03126 Plus-3 6.20E-23 No_clan Blo TR
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo04g00538 Blo_Chr04 FPKM 21.842283 25.929136 19.349707 18.70809 21.953724 24.05468 24.357435 22.032013 21.932661 20.625328