Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo04g00551 ATGACTTCGGCTTCTAATGGCGGCCATCAGGATGCTGCTGAGAAGCGTCCCGCTTCCTCTGTTCTTATCATCATTGTACAGAGAGCAGTGAGAAACATGGGCAATGGAGATTTTGGTGGAGGAGGTTTCACAGAGAAAGCTAACCCTGGTAAAGCAACGATTTTGGCTCTTGGCAAGGCTTTTCCCCACCAGCTTGTCATGCAAGAGTACCTCGTTGATGGCTACTTCAAAGACACCAACTGCGATGATCCTGACCTCAAGCAGAAGCTCACTCGCATAAGCAAAACAACAACGGTGAAAACCAGGTACGTTGTGATGTCAGAAGAGATTCTAAGGGAATATCCAGAGCTCGCCATTGAAGGCCGACCAACAGTGAAGCAAAGGCTCGACATTTGCAACGCTGCTGTAACAGAGATGGCCATCGAAGCTTCAAAAGCTTGCATCAAGAACTGGGGAAGGCCTGTTTCAGAGATAACCCATTTGGTCTACGTCTCTTCCAGTGAAGTCCGATTACCCGGCGGAGATCTCTACTTAGCGACCGGCCTAGGCCTTAGCCCCGAAACTCAACGGGTGATGCTCTACTTCATGGGCTGCTCCGGTGGAGTTGCTGGCCTCCGTCTGGCTAAAGACATAGCCGAGAATAATCCCGGCAGTCGAGTTCTCCTTACCACTTCCGAAACCACTGTTATTGGGTATAAGCCTCCGAGTGCTCAGCGACCTTATGATCTCGTGGGAGTCGCGCTCTTCGGCGACGGCGCTGGAGCATTGATGATCGGGTCGGATCCCGTAGTAAACATCGAGCGTCCTCTTTTTGAACTCCACAAGGCAATTCAGCAGTTCTTGCCAAACACAGAGAAAATTATTGACGGCCGACTGACGGAAGAGGGGATCAGTTTCAAGCTAGACAGGGAGATTCCTCACATCATAGAAGATAACATTGAGAAATTCTGTGAGGATTTAATGGGGGTGGTAGGATTCAACGGGAAGGAATACAACGAGCTGTTTTGGGCGGTCCATCCGGGAGGGCCGGCGATATTGAACCGGTTAGAAAAGCGGCTGGATCTGTCGCCGGAAAAGCTGAATGCGAGTAGGCGGGCACTGATGGACTATGGGAATGCGAGTAGTAATACGATCGTATATGTGCTTGAGTACATGATAGAAGAGAGCTTGAAGATGAAGAAAGGAGGGGATGAAAATGGCGAGTGGGGATTGATTCTTGCTTTCGGACCTGGCATTTCGTTCGAGGGAATTCTGGCAAGGAACTTGGCTCTCTTATCCTTAAAATAA 1287 49.73 MTSASNGGHQDAAEKRPASSVLIIIVQRAVRNMGNGDFGGGGFTEKANPGKATILALGKAFPHQLVMQEYLVDGYFKDTNCDDPDLKQKLTRISKTTTVKTRYVVMSEEILREYPELAIEGRPTVKQRLDICNAAVTEMAIEASKACIKNWGRPVSEITHLVYVSSSEVRLPGGDLYLATGLGLSPETQRVMLYFMGCSGGVAGLRLAKDIAENNPGSRVLLTTSETTVIGYKPPSAQRPYDLVGVALFGDGAGALMIGSDPVVNIERPLFELHKAIQQFLPNTEKIIDGRLTEEGISFKLDREIPHIIEDNIEKFCEDLMGVVGFNGKEYNELFWAVHPGGPAILNRLEKRLDLSPEKLNASRRALMDYGNASSNTIVYVLEYMIEESLKMKKGGDENGEWGLILAFGPGISFEGILARNLALLSLK 428
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 4768555 4771677 + BLOR13463 Blo04g00551 59579

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo04g00551 428 SUPERFAMILY Thiolase-like 49 263 IPR016039 GO:0016746
Blo04g00551 428 PANTHER HYDROXYMETHYLGLUTARYL-COA SYNTHASE 46 423 IPR011141 GO:0009058|GO:0016747
Blo04g00551 428 Pfam Chalcone and stilbene synthases, N-terminal domain 46 262 IPR001099 -
Blo04g00551 428 Gene3D - 270 422 IPR016039 GO:0016746
Blo04g00551 428 SUPERFAMILY Thiolase-like 269 420 IPR016039 GO:0016746
Blo04g00551 428 CDD CHS_like 52 418 - -
Blo04g00551 428 Pfam Chalcone and stilbene synthases, C-terminal domain 272 422 IPR012328 -
Blo04g00551 428 PANTHER TYPE III POLYKETIDE SYNTHASE B 46 423 - -
Blo04g00551 428 PIRSF PKS_III 43 424 IPR011141 GO:0009058|GO:0016747
Blo04g00551 428 Gene3D - 43 269 IPR016039 GO:0016746
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo04g00551 - - - tcc:18607619 662.914
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Blo04g00551 Blo13g00525 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo02g00383 Blo-Chr2:4424319 Blo04g00551 Blo-Chr4:4768555 4.81E-173 dispersed
Blo04g00551 Blo-Chr4:4768555 Blo12g00124 Blo-Chr12:8666325 1.58E-100 dispersed
Blo13g00525 Blo-Chr13:26825643 Blo04g00551 Blo-Chr4:4768555 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g95 . . . . . Bpe12g00109 . . . Cmo11g01722 . . . . . Cpe04g00573 Cpe15g00577 . . . . . . . Cla02g00450 Cam02g0458 Cec02g0457 Cco02g0476 Clacu02g0459 Cmu02g0454 Cre02g0788 . . . . . . . . Blo04g00551 Blo13g00525 Bda15g01045 . . . . Bma08g00766 . . . Cma11g01399 . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002086 1 1 2 2 1 2 2 2 2 2 2 2 4 2 2 4 2 4 3 2 2 2 2 2 2 2 2 2 2 2 64
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo04g00551 Blo_Chr04 FPKM 10.693548 7.974544 3.198892 3.026902 3.619133 0.0 2.831133 0.892826 0.491819 0.0