Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo04g00558 ATGGAAAATGGAGCTGATATTGTTGATGGCTTGCACACGGGGGACACAAAGAGTTTGGAGACTTCTGAGGATAGGGTAGAGGAGGGAGTTGTTTTTGACGATGCAATTAATGCAGGGGAAGATATTCTGGAACAGCGGATGAATTCTGACTCTGCAGACGGGGTTGTTAAGGAAGAAAGAGAGGAGCAACCATCTGGTGATTCCAAACATAGCATGGTTTATGAGGATCCTAATTCTGTTTATGAGATTGATAAATTTGAAGAGGCAACGGATGGTTTAAGTTTGACGGGCCAAAATAGGGAGGAAGTCAATGATGAAGGGAAACCCACCTTAATCACTACAAAGGAGGAAGTCTATGATGATGGGGGTTCTGTTCTAGAGACCATAGCAACTTGTGTCGTTGATGAGGAAGATTCCGAGGAGAAAGTAAAGTCTGAATTCAATGAATTACCAAATGGATTAAGTAGTTACAAAGATGGGGGAGAGGAGTTTTCTGAAGTTGGTGCTAGGAATGAGGGCGGAATTTTGAATGAGGATGAGACTGATGATGTTAAATCTAGTGTAACGATTTCTGAGTCAGGATCAGGAGTTGATGCTGTTAATGAGAATTTAGAGGAGCCAGTGAGTATGGATGAGACTGCCAATAACAATAAAAGTGAAAAACCAAATGATGACTGTAACCTTATGAATGCTGATGCAAAATTCGCTGATAAGGAAAGTGGGGAACTTGAAGATTCCACTACCAGTTCTAAATCAAGGTCTGAAAATGAAGAAGGTGAAGATTTAAGTTATTCTTCAACTCCCGAAAGAAAAGAACATATGGATTACAATGTCAAGGAAATGAATAGTGCTTCAGTTGTGGTGGATTCAGGTGATAATGGAGACACATCAGATGCTTCAACGGTGAATTTAGAACTTAATGGGCTAACAACGTCCAAAGTTAAAAATAATTCAGCTGATCTGCCTAAAACTGTGGATATAACGGAGGTGGAGGTCCAAAATGGAACACTGTCTCCTGTTAATGTAAATAATGAAAAGGCAGTAAAGATTCAGGATCTTAACACTGGTTTGATTGCAACGGATAACCACATTGATAAAAGTCAGCAACTTGATGATTACGACAAACGTAGTATTAGCGTAGAGAAACTTGAAAAGGCAGAGGGAAAGGTTCAAGAAGAAAATCAGGGCACTCGCCCAAATACAGATGCGGGAGTACAACCTTCACCCAATTTATCTTTGTCATCTAAAAAAGCTTCAAATCCTGCCCCTTCTCCTGCTCGCCCTGCTGGTCTTGGGCGTGCTGCTCCATTATTAGAGCCTGCTCTGCGGACGGCACAACAGCCCCGTGTAAATGGTAATTCTTCACATATGCAGTCTCAACAAATTGAGGACTCTTCAAATGGAGAGGCTGAGGAGAATGACGAGACTCGTGAAAAACTCCAAATGATAAGGGTGAAATTTCTGCGTCTTGCTCATAGGCTTGGTCAGACTCCACATAACGTTGTTGTGGCTCAGGTTTTGTATCGTCTTGGTTTAGCTGAGCAGCTGCAAGGAAGAAGTGGAGGCCGGGTCGGTGCCTTCAGTTTTGATCGTGCTAGTGCCATAGCAGAGCAGCTTGAGGCAGCTGGGCAAGAGCCTCTTGATTTTTCTTGTACAATTATGTTTTTGGGGAAGACAGGCGTTGGTAAAAGTGCAACTATTAATTCCATATTCGACGAAGTTAAGTTTGGCACAGATGCATTTCAAATTGGTACAAAGAAAGTTCAGGAGGTTGTGGGTACTGTGCAGGGTATTAAGGTGCGCGTCATTGACACACCAGGCCTTCTGTCCTCGTGGTCAGATCAGCGCCACAATGAAAAGATTCTCCTTTCTGTTAAGCGCCTTATCAAGAAAACACCTCCAGATATTGTATTGTATCTTGACAGGTTGGACGTGCAGAACAGGGATTTTAGTGACATGCCACTCTTGCGGACTATCACAGACATATTTGGCCCGTCCATTTGGTTTAATGCAATTGTGCTATTCACTCATGCGGCTTCAGCTCCACCTGATGGCCCCAATGGTACTGCTTCAAGCTATGACATGTTTGTTACTCAGCGCTCTCATGTTGTCCAGCAAGCCATTCGTCAGGCAGCTGGTGATATGCGGCTCATGAATCCTGTGTCACTCGTGGAGAACCACTCTGCATGCAGAACAAACAGAGCTGGACAAAGAGTTTTGCCAAACGGTCAGGTATGGAAGCCTCATTTGTTACTTCTGTCATTTGCAGCAAAGATCCTGGCTGAAGCAAATGCACTGTTGAAGCTTCAAGACAGTCCTCCTGGAAGGCCTTTCACAGCTCGATCAAGGGCTCCTCCCTTACCTTTTCTCCTCTCGTCCCTTCTTCAATCGAGACCACAGGTTAAACTGCCTGAGGAACAGTTTGCTGATGGGGATGATGTTGAGGATGAATTGGATGAATCTTCAGATTCTGAAGAAGAATCAGAATACGATGAGTTACCACCATTCAAACGATTGACGAAGGCTCAAGTCGCAAAACTCTCCAAGGAACAGAGGAAGGCATATTTTGATGAATTAGAATATAGGGAAAAACTGTTTATGAAGAAACAACTAAAAGAAGAGAAAAGGCGGCGAAAAATGATGAAGAAGATGGCAGCTCAGATTAGGGATCTGCCAAGTGACTACACTGAGAATGTAGAAGAAGAAAGTAATGGTGCAGCATCAGTGCCAGTTCCCATGCCAGATTTGGCATTACCTGCTTCATTTGATTCTGATAATCCTACTCACCGGTATCGATATCTTGACTCATCCAACCAATGGCTAATAAGGCCAGTACTAGAAACACATGGTTGGGACCATGATGTTGGTTATGAAGGTATAAATGTAGAAAAGCTGTTTGTCATCAAAGAGAGAATTCCCTTATCCTTTTCGGGTCAGGTTTCCAAGGATAAGAAGGATGCCAACATTCAGATGGAAATGACAAGTTCAATAAAGCATGGAGAAGGAAAAGCAACTTCTTTTGGTTTTGATATGCAAACTGTTGGGAAGGACTTGGCATACACTCTTCGTGGTGAGAGGATATTTTGTAATTTTTGGAAAAATAAGGCTATTGCTGGTATTTCAGCCACTCTTTTAGGTGATACTTTATCTGGTGGAGTGAAAGTAGAAGACAAATTGATTGCCAGTAAAAGATTCCAGTTGGTTATAGCCGGAGGTGCAATGACCAGTCGAGGAGATGTTGCTTATGGAGGAAGTCTGGAGGCTCAATTAAGGGATAAAGAGTATCCTTTGGGTCGATCACTATCAACTCTTGGGCTTTCTGTTATGGATTGGCATGGAGATCTTGCCATTGGATGCAATTTACAGTCTCAAATTCCCATTGGACGATCAACAACTCTGATAGGTAGAGCCAATTTGAATAATAGGGGGGCTGGGCAAGTAAGCATTCGCTTAAACAGCTCTGAACAGCTTCAAATAGCATTAATCGGCCTTGTTCCTCTCGTGAAGAAGATTTTTGGTTATCATCAGCAGTTGTAG 3537 42.8 MENGADIVDGLHTGDTKSLETSEDRVEEGVVFDDAINAGEDILEQRMNSDSADGVVKEEREEQPSGDSKHSMVYEDPNSVYEIDKFEEATDGLSLTGQNREEVNDEGKPTLITTKEEVYDDGGSVLETIATCVVDEEDSEEKVKSEFNELPNGLSSYKDGGEEFSEVGARNEGGILNEDETDDVKSSVTISESGSGVDAVNENLEEPVSMDETANNNKSEKPNDDCNLMNADAKFADKESGELEDSTTSSKSRSENEEGEDLSYSSTPERKEHMDYNVKEMNSASVVVDSGDNGDTSDASTVNLELNGLTTSKVKNNSADLPKTVDITEVEVQNGTLSPVNVNNEKAVKIQDLNTGLIATDNHIDKSQQLDDYDKRSISVEKLEKAEGKVQEENQGTRPNTDAGVQPSPNLSLSSKKASNPAPSPARPAGLGRAAPLLEPALRTAQQPRVNGNSSHMQSQQIEDSSNGEAEENDETREKLQMIRVKFLRLAHRLGQTPHNVVVAQVLYRLGLAEQLQGRSGGRVGAFSFDRASAIAEQLEAAGQEPLDFSCTIMFLGKTGVGKSATINSIFDEVKFGTDAFQIGTKKVQEVVGTVQGIKVRVIDTPGLLSSWSDQRHNEKILLSVKRLIKKTPPDIVLYLDRLDVQNRDFSDMPLLRTITDIFGPSIWFNAIVLFTHAASAPPDGPNGTASSYDMFVTQRSHVVQQAIRQAAGDMRLMNPVSLVENHSACRTNRAGQRVLPNGQVWKPHLLLLSFAAKILAEANALLKLQDSPPGRPFTARSRAPPLPFLLSSLLQSRPQVKLPEEQFADGDDVEDELDESSDSEEESEYDELPPFKRLTKAQVAKLSKEQRKAYFDELEYREKLFMKKQLKEEKRRRKMMKKMAAQIRDLPSDYTENVEEESNGAASVPVPMPDLALPASFDSDNPTHRYRYLDSSNQWLIRPVLETHGWDHDVGYEGINVEKLFVIKERIPLSFSGQVSKDKKDANIQMEMTSSIKHGEGKATSFGFDMQTVGKDLAYTLRGERIFCNFWKNKAIAGISATLLGDTLSGGVKVEDKLIASKRFQLVIAGGAMTSRGDVAYGGSLEAQLRDKEYPLGRSLSTLGLSVMDWHGDLAIGCNLQSQIPIGRSTTLIGRANLNNRGAGQVSIRLNSSEQLQIALIGLVPLVKKIFGYHQQL 1178
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 4819538 4823371 - BLOR13470 Blo04g00558 59586

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo04g00558 1178 MobiDBLite consensus disorder prediction 44 75 - -
Blo04g00558 1178 MobiDBLite consensus disorder prediction 51 69 - -
Blo04g00558 1178 TIGRFAM 3a0901s04IAP86: chloroplast protein import component Toc86/159, G and M domains 427 1174 IPR005690 GO:0003924|GO:0005525|GO:0009707|GO:0045036
Blo04g00558 1178 Gene3D - 520 768 IPR027417 -
Blo04g00558 1178 MobiDBLite consensus disorder prediction 225 272 - -
Blo04g00558 1178 MobiDBLite consensus disorder prediction 384 432 - -
Blo04g00558 1178 MobiDBLite consensus disorder prediction 1 26 - -
Blo04g00558 1178 PANTHER TRANSLOCASE OF CHLOROPLAST 120, CHLOROPLASTIC-LIKE 397 1176 - -
Blo04g00558 1178 Pfam AIG1 family 551 684 IPR006703 GO:0005525
Blo04g00558 1178 PANTHER GTPASE, IMAP FAMILY MEMBER-RELATED 397 1176 IPR045058 -
Blo04g00558 1178 MobiDBLite consensus disorder prediction 804 835 - -
Blo04g00558 1178 MobiDBLite consensus disorder prediction 140 272 - -
Blo04g00558 1178 ProSiteProfiles AIG1-type G domain profile. 548 777 IPR006703 GO:0005525
Blo04g00558 1178 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 544 685 IPR027417 -
Blo04g00558 1178 MobiDBLite consensus disorder prediction 393 421 - -
Blo04g00558 1178 MobiDBLite consensus disorder prediction 91 110 - -
Blo04g00558 1178 MobiDBLite consensus disorder prediction 809 830 - -
Blo04g00558 1178 MobiDBLite consensus disorder prediction 208 224 - -
Blo04g00558 1178 CDD Toc34_like 520 768 - -
Blo04g00558 1178 MobiDBLite consensus disorder prediction 446 466 - -
Blo04g00558 1178 Pfam Translocase of chloroplast 159/132, membrane anchor domain 909 1172 IPR024283 -
Blo04g00558 1178 MobiDBLite consensus disorder prediction 446 476 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo04g00558 - - - csv:101205042 1310.43
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Blo04g00558 Blo13g00521 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo04g00558 Blo-Chr4:4819538 Blo06g00485 Blo-Chr6:26422651 0 dispersed
Blo01g01289 Blo-Chr1:49527831 Blo04g00558 Blo-Chr4:4819538 1.76E-06 transposed
Blo13g00521 Blo-Chr13:26749672 Blo04g00558 Blo-Chr4:4819538 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g129 . . . . . Bpe12g00112 . . Cmo19g00737 . . . . . Sed08g0469 . Cpe15g00583 Bhi05g01734 Tan02g0702 Cmetu06g1183 . Hepe02g0438 . . Cla02g00439 Cam02g0448 Cec02g0446 Cco02g0466 Clacu02g0450 Cmu02g0444 Cre02g0778 Cone2ag0203 Cone16ag0840 . . . Csa07g00087 . Cme01g01277 Blo04g00558 Blo13g00521 . Bda14g00607 Bpe15g00822 . Bma03g00599 Bma08g00616 . . . Cma11g01385 Cma19g00728 . Car19g00558 . . . . . . . . . . . . . . . . Lsi11g01187 . Chy01g00691 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005811 1 1 2 2 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 1 2 1 39
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo04g00558 Blo_Chr04 FPKM 40.823868 45.20528 70.498619 74.066147 32.575153 29.312246 30.861385 94.007858 93.847397 92.761589