Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo04g00560 ATGTCTATCCTCAAGAACAGCCAGCTGAGTCAGCAATGGGACAAGATCCAGTGGATAAGGCTGTCCAAAATGCCCTTAGTTTTCATTTCCTATACATTCTCCATTCTCTTGGCCTTCCATTGTCATCAAGCTTCTTTTCATTTTGTGTCTTCGTCATTTCAAACCTCGTTTCTTCAGCTTCCGACCAGGCCTGCTTCTTCTAAAGGATCAGCAAGTAAACCTCTTTGTGGAGGATTTCGAAAAGGGAAGTCTATTGTTTCTGCTTCTTCTGAGAGGACGAAAAATTTTGGTGGTCAAATCCGAATGAGTAATTCTTCTCTGTCACTTTACGAAGTTCTGGGGATTCCGGCAAGTGCGAGCCGCCGCGAAATCAAATCGGCTTACAGAAGATTAGCCAGAACGTGTCATCCCGACGCCGTCGCTATAAACCAGAAGGAAAGGTCGGCGAATGAGTTTATGAAAGTCCACGCAGCGTATTCAACATTATCAGACCCTGATAAAAGAGCGACTTATGATTTGGATCTTTTCCGGCATCGGAAGCCATTCGTTTCGTCAGTAAAAATGGCATCTGCATCGTCACCGGAGACTGTTTTTTCCGGTCATGTTGGTCGGAATTGGGAGACAGATCAATGTTGGTAG 639 44.91 MSILKNSQLSQQWDKIQWIRLSKMPLVFISYTFSILLAFHCHQASFHFVSSSFQTSFLQLPTRPASSKGSASKPLCGGFRKGKSIVSASSERTKNFGGQIRMSNSSLSLYEVLGIPASASRREIKSAYRRLARTCHPDAVAINQKERSANEFMKVHAAYSTLSDPDKRATYDLDLFRHRKPFVSSVKMASASSPETVFSGHVGRNWETDQCW 212
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 4835515 4836153 + BLOR13472 Blo04g00560 59588

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo04g00560 212 Gene3D DnaJ domain 94 192 IPR036869 -
Blo04g00560 212 ProSitePatterns Nt-dnaJ domain signature. 152 171 IPR018253 -
Blo04g00560 212 Pfam DnaJ domain 109 172 IPR001623 -
Blo04g00560 212 PANTHER DNAJ DOMAIN (PROKARYOTIC HEAT SHOCK PROTEIN)-RELATED 84 212 - -
Blo04g00560 212 PANTHER DNAJ DOMAIN (PROKARYOTIC HEAT SHOCK PROTEIN)-RELATED 78 212 - -
Blo04g00560 212 SMART dnaj_3 107 167 IPR001623 -
Blo04g00560 212 PRINTS DnaJ domain signature 128 143 IPR001623 -
Blo04g00560 212 PRINTS DnaJ domain signature 110 128 IPR001623 -
Blo04g00560 212 PRINTS DnaJ domain signature 147 167 IPR001623 -
Blo04g00560 212 CDD DnaJ 110 164 IPR001623 -
Blo04g00560 212 PANTHER DNAJ PROTEIN HOMOLOG-LIKE 78 212 - -
Blo04g00560 212 SUPERFAMILY Chaperone J-domain 42 171 IPR036869 -
Blo04g00560 212 ProSiteProfiles dnaJ domain profile. 108 175 IPR001623 -
Blo04g00560 212 PANTHER - 84 212 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo04g00560 - - - palz:118040481 155.221
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Blo04g00560 Blo13g00517 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo04g00560 Blo-Chr4:4835515 Blo05g00711 Blo-Chr5:24695531 1.56E-35 dispersed
Blo04g00420 Blo-Chr4:3444764 Blo04g00560 Blo-Chr4:4835515 1.22E-09 transposed
Blo13g00517 Blo-Chr13:26692031 Blo04g00560 Blo-Chr4:4835515 6.30E-82 wgd
Blo17g00744 Blo-Chr17:23035728 Blo04g00560 Blo-Chr4:4835515 3.81E-29 wgd
Blo18g00777 Blo-Chr18:22184070 Blo04g00560 Blo-Chr4:4835515 1.97E-31 wgd
Blo04g00560 Blo-Chr4:4835515 Blo05g00847 Blo-Chr5:30433776 9.18E-14 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g133 . . . . . Bpe12g00115 . . . . . . . Car20g00667 . . . . . . . . . . . . . . . . . Cone8ag0852 . . Cone9ag1605 . . Chy11g00279 . Blo04g00560 Blo13g00517 Bda15g01040 Bda14g00609 Bpe15g00820 . Bma03g00601 Bma08g00760 . . . . . . . Cpe16g00304 . . . . . . . . Cla02g01148 Cam02g1225 Cec02g1232 Cco02g1274 Clacu02g1205 Cmu02g1174 Cre02g1483 . Csa02g01369 . Cme11g00399
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001923 4 1 3 3 4 1 3 2 1 2 2 2 2 2 2 2 1 3 3 2 2 2 2 2 2 2 2 4 2 1 66
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo04g00560 Blo_Chr04 FPKM 34.120766 36.520302 20.283003 19.478916 21.214899 19.598284 22.290031 16.306101 15.999089 15.29111