Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo04g00586 ATGGAGTTTACCCGTAAGAAATCACTGAAATCCAGTCTCTCTTATAAGCATTCGGGGGGAAGAGGATCTAGCGAAGATTGCACTGAAGCGCTTCCCATTCTTTTGGATCATCAACCAGAAACAGGCGGTCCTCTTCTTCCTACTGATCGAGAAGTTATCCTCAAGATCGACGACGGAGATTCCTCCTCTGGTGCTTCCAGACGCCGGAGGGAGGATTTTGATTTTATGCAACCATCGGATAATGAAATGGCGGAAGATCCACCGTCGAAGCTGATTGGCCAGTTTTTGCAGAAACAGAAAACATCCGGGCAAATGGCGCTGGACATGGATTTAGAAATGGAGGAGCTTCGTGATCATGACCGAAATTTGCCTCCGGTACCGGAGACTCCGATTTTTAATCTTTCTAGGGAGATTAAAGTATCGTTTCAGACAAATTCGCCGGAGATTTCTAATAACGACTCGTTTCGCCGGAGATATAGAGAGTCTCAGGGGCAGGAAGAATTAAGAGGACACCAACCACAGGAGCAGCAACACCATCGACGGAGGTCTTCGAATTTCAATAACAATGGCGACAATCAGGTCCTGAGGTGCACTTCAAACGCGTCGTTTCAGAGGGAAGCTTCTTTTCAGAGAAGATCCAGTCTCCTGAGGTTGAAAACAAAGTCCAGATTAATGGATCCTCCCAACGAACCGGACCGGCGATCCGGTAGGATTCCGAAATCCGGGCAATTACGATCTGGATTACTAGGAAAGCCTATGGATGACGAAGACGAAGACCCATTTTTCGACGAAGATCTTCCCGACGAGTATAAAAGAGCGAACCTCGGCGTTTTAACCATACTCCAATGGGTGAGCTTGGTTATGATAATGGCTGCTCTAATTTGCACTCTCTCCATTTCCGATTTGAGGAAAGTAATCCTTTGGAAACTCAAGCTATGGAAATGGGAGCTGATGATTCTGGTTCTAATCTGCGGTCGATTAGTATCCGGCTGGGGAATCAGAATGGTCGTCTCCTTCATTGAAATGAACTTTCTCCTTCGTAAAAGGGTTCTATATTTCGTCTATGGAATCAGAAAACCAGTCCAGAATTGTCTCTGGTTAGGTCTAGTTTTAATCGTTTGGCATCTGCTTTTCGACAAGAGAGTAGAAAATGAAACTAAAGGCAAGGCTCTCCAATATGTGACGAAGATACTGATTTGTCTTCTCGTCGGATTCTTGATTTGGTTAGTGAAAACCCTAATGGTGAAAGTATTAGCTTCTTCTTTCCATGTGAGTACTTACTTCGATCGGATCCAAGAATCTCTCTTCAACCAGTACGTAATTGAGACGCTCTCCGGACCACCGCTCATCGAAATCCAGAAGAATGACGAAGACGAAGAGAAACTCGCCGACGAAGTACGGAAGTTGCAGAGCGCCGGAGCGACAATTCCGGCGGACCTGAAGAACAATGCATTCTCGACGTTAAAAAGCGGGAGAGTAATAGGGAGCGGAGGGCTGCCGAAAGGTCCGAGTCCGCCTGGAAAGAGCATGAAGCTTTCCAGCTCGATTACGAAGAATGCAGATGATCAGGGAATCACCATTGATCACCTGCACAAGCTCAGTCCAAAAAATGTTTCCGCTTGGAATATGAAGAGGTTGATGAACATTGTTCGACATGGGACTATTTCTACTTTTGATGAGCAGATTCTGGGTTCTACTTCTAGGCATGAAGATGACTCTGCAACTCAGATTCGTAGCGAGAGAGAGGCAAAGGCAGCAGCCAGGAAAATCTTCCAGAACGTCGCTCGCCATGGATTCAAGTTCGTCATCTGTTTATCTGCTTCTTCTTAA 1830 45.96 MEFTRKKSLKSSLSYKHSGGRGSSEDCTEALPILLDHQPETGGPLLPTDREVILKIDDGDSSSGASRRRREDFDFMQPSDNEMAEDPPSKLIGQFLQKQKTSGQMALDMDLEMEELRDHDRNLPPVPETPIFNLSREIKVSFQTNSPEISNNDSFRRRYRESQGQEELRGHQPQEQQHHRRRSSNFNNNGDNQVLRCTSNASFQREASFQRRSSLLRLKTKSRLMDPPNEPDRRSGRIPKSGQLRSGLLGKPMDDEDEDPFFDEDLPDEYKRANLGVLTILQWVSLVMIMAALICTLSISDLRKVILWKLKLWKWELMILVLICGRLVSGWGIRMVVSFIEMNFLLRKRVLYFVYGIRKPVQNCLWLGLVLIVWHLLFDKRVENETKGKALQYVTKILICLLVGFLIWLVKTLMVKVLASSFHVSTYFDRIQESLFNQYVIETLSGPPLIEIQKNDEDEEKLADEVRKLQSAGATIPADLKNNAFSTLKSGRVIGSGGLPKGPSPPGKSMKLSSSITKNADDQGITIDHLHKLSPKNVSAWNMKRLMNIVRHGTISTFDEQILGSTSRHEDDSATQIRSEREAKAAARKIFQNVARHGFKFVICLSASS 609
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 5052791 5054620 - BLOR13498 Blo04g00586 59614

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo04g00586 609 MobiDBLite consensus disorder prediction 1 88 - -
Blo04g00586 609 MobiDBLite consensus disorder prediction 143 194 - -
Blo04g00586 609 MobiDBLite consensus disorder prediction 223 239 - -
Blo04g00586 609 MobiDBLite consensus disorder prediction 220 255 - -
Blo04g00586 609 PANTHER MECHANOSENSITIVE ION CHANNEL PROTEIN 5 4 602 IPR016688 -
Blo04g00586 609 Coils Coil 452 472 - -
Blo04g00586 609 MobiDBLite consensus disorder prediction 51 77 - -
Blo04g00586 609 PANTHER MECHANOSENSITIVE ION CHANNEL PROTEIN 4 602 - -
Blo04g00586 609 MobiDBLite consensus disorder prediction 153 185 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo04g00586 K22048 MSL4S; mechanosensitive ion channel protein 4/5/6/7/8/9/10 - csv:101210264 664.84
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo04g00586 Blo-Chr4:5052791 Blo12g01027 Blo-Chr12:28161603 1.20E-64 dispersed
Blo15g00394 Blo-Chr15:5505605 Blo04g00586 Blo-Chr4:5052791 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g220 . . . . . . . . . . . Cma20g00732 . Car20g00632 . Cpe04g00610 . Bhi05g01668 . . . Hepe02g0399 . . . . . . . . . . Cone8ag1305 . . Lsi10g00812 Csa07g00130 . . Blo04g00586 . . Bda14g00631 . . Bma03g00619 . . . Cmo20g00729 . . Car11g01388 . . . . . . . . . . Cla02g01085 Cam02g1162 Cec02g1160 Cco02g1208 Clacu02g1153 Cmu02g1115 Cre02g1419 Lsi11g01224 . . .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Blo16g00585 BCT 1 571 Mechanosensitive Ion Channel Family AT4G00290 52.4 4.1e-147 518.5
Blo17g00099 . 686 1270 Mechanosensitive Ion Channel Family AT5G10490 59.0 2.6e-181 632.5
Blo18g00106 . 9 646 Mechanosensitive Ion Channel Family AT5G10490 53.6 2.2e-180 629.4
Blo05g00739 . 210 695 Mechanosensitive Ion Channel Family AT5G10490 62.2 4.1e-150 528.9
Blo18g00106 . 9 653 Mechanosensitive Ion Channel Family AT1G58200 55.1 1.3e-185 646.7
Blo17g00099 . 669 1266 Mechanosensitive Ion Channel Family AT1G58200 58.8 1.1e-184 643.7
Blo05g00739 . 210 666 Mechanosensitive Ion Channel Family AT1G58200 57.7 2.4e-134 476.5
Blo15g00394 . 611 1471 Mechanosensitive Ion Channel Family AT1G53470 52.7 1.1e-240 830.1
Blo15g00394 . 611 1473 Mechanosensitive Ion Channel Family AT3G14810 52.2 2.4e-232 802.4
Blo15g00394 . 611 1472 Mechanosensitive Ion Channel Family AT1G78610 58.1 5.0e-270 927.5
Blo15g00394 . 769 1468 Mechanosensitive Ion Channel Family AT2G17000 58.2 4.7e-220 761.5
Blo04g00586 . 217 602 Mechanosensitive Ion Channel Family AT2G17000 55.0 1.8e-110 397.5
Blo12g01027 BCT 16 781 Mechanosensitive Ion Channel Family AT5G19520 50.8 2.1e-195 679.5
Blo12g01027 BCT 71 781 Mechanosensitive Ion Channel Family AT5G12080 56.9 2.6e-214 742.3
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001937 2 3 2 2 2 2 2 2 2 2 2 2 2 2 2 1 2 5 2 2 2 2 2 2 2 3 2 5 3 1 67
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo04g00586 Blo_Chr04 FPKM 15.663931 18.414652 16.287918 18.001049 37.748688 32.180267 40.39481 10.597713 9.222919 11.077835