Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo04g00593 ATGCTGTGGAGTTTTATATTGCAATTTGGGATTGTGGTTATTTTTCTGGGTAGTGCTTATGGGGAAGATCCTTACAGATTTTTCGACTGGAATATCACCTACGGTGATATATATCCTCTGGGCGTTCGTCAACGGGGAATTCTGATAAATGGACAATTTCCGGGGCCTGATATATTCTCTGTTACAAACGATAACCTCATCATTAATGTTCGTAACAGTCTGCCTGAGCCATTTCTCATTTCATGGAGTGGAGTACAACAGAGGAAAAATTCCTACCAAGATGGAGTGTACGGAACAAATTGCCCAATTCCTCCTGGCAAAAACTTCACCTACAAAATGCAAATGAAAGACCAAATTGGCTCCTTCTTCTACTTCCCCTCTCTTGCTTTTCACAAAGCGGCTGGCGGATTTGGTGCCATCAGAATCCTAAGCCGGCCGAGGATTCCAGTCCCTTTTCCGGAACCAGCTGTGGACTACACCGTCCTCATTGGAGATTGGTACCTAACAGATCACAAGAAATTACAGGCCATTTTGGACGGTGGTCGTAGGCTTCCTTTCCCCGATGGAGTTCTCATCAATGGCCGCGGTTCTAATGGCACCACCACTTTCACTATTGAACAGGGGAAAACTTACAGACTTAGAATAACAAATGTGGGTCTTCAAAATTCCCTCAATTTCCGCATTCAAGGCCACAGTATGAAGCTCGTTGAAGTGGAAGGGACCCACACCGTCCAAACCACTTACTCATCAATTGACCTCCACGTTGGCCAGTCTTACTCTGTGCTCATCACAGCTGATCAGCGCCCTCTTGACTATTATATAGCCGTCTCAACCCGGTTCAACTCTAAAGTTCTCACCACCACCGCGACCCTTCACTACAGCAACTCCGCCGGTTCAGTGGTAGGACCAGTTCCTGCCGAACCGACCGACCAATTCAACTGGTCTCTCAAACAAGCTCGTTCAATCAGGACGAACCTCACAGCTAGTGGACCCAGACCAAACCCTCAAGGATCATATCATTATGGTCTCATAAACGTGTCTAGAACTATTGTTTTGGCGAACTCGGCTGCTCAAGTTGGTGGGAAGCAAAGATATGGAGTTAACAGCGTGTCCTTTGCGCCAGCTGATACGCCTCTCAAATTAGCAGATTACTTCAAAATTGCCGGTGTTTTTAAAGTTGGAAGCATTTCCGATAATCCTACTGGGACGAAAATGTACCTCGATACTTCAGTAATGGGGGCTGATTTTAGAGCCTTTGTTGAGATTGTTTTCCTGAACAAAGAGAATATTGTCCAAAGTTGGCACCTGGATGGACTCTCCTTCTGGGTTGTTGGAATGGACCAAGGAGCATGGACTCCGGCCAGCCGGAAACAATACAATCTCAGAGATGCAGTCTCCCGTTGCACCACACAGGTATATCCGCGGTCATGGACTGCCATTTACGTTGCCCTTGATAATGTTGGAATGTGGAACTTGAGGACAGAGTTTTGGGCAAGACAGTACCTTGGCCAACAACTTTATCTTCGAGTTTATTCCCCTGTGGGATCCATCAGAGACGAGTACCTCCTTCCAGACAATGCTCTTCTTTGTGGAAGAGCTGTCGGCCAGCGAAGATCTTTGTAA 1623 46.52 MLWSFILQFGIVVIFLGSAYGEDPYRFFDWNITYGDIYPLGVRQRGILINGQFPGPDIFSVTNDNLIINVRNSLPEPFLISWSGVQQRKNSYQDGVYGTNCPIPPGKNFTYKMQMKDQIGSFFYFPSLAFHKAAGGFGAIRILSRPRIPVPFPEPAVDYTVLIGDWYLTDHKKLQAILDGGRRLPFPDGVLINGRGSNGTTTFTIEQGKTYRLRITNVGLQNSLNFRIQGHSMKLVEVEGTHTVQTTYSSIDLHVGQSYSVLITADQRPLDYYIAVSTRFNSKVLTTTATLHYSNSAGSVVGPVPAEPTDQFNWSLKQARSIRTNLTASGPRPNPQGSYHYGLINVSRTIVLANSAAQVGGKQRYGVNSVSFAPADTPLKLADYFKIAGVFKVGSISDNPTGTKMYLDTSVMGADFRAFVEIVFLNKENIVQSWHLDGLSFWVVGMDQGAWTPASRKQYNLRDAVSRCTTQVYPRSWTAIYVALDNVGMWNLRTEFWARQYLGQQLYLRVYSPVGSIRDEYLLPDNALLCGRAVGQRRSL 540
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 5098059 5100977 - BLOR13505 Blo04g00593 59621

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo04g00593 540 Gene3D - 157 330 IPR008972 -
Blo04g00593 540 Pfam Multicopper oxidase 32 145 IPR011707 GO:0005507
Blo04g00593 540 Gene3D - 25 146 IPR008972 -
Blo04g00593 540 SUPERFAMILY Cupredoxins 22 172 IPR008972 -
Blo04g00593 540 SUPERFAMILY Cupredoxins 152 333 IPR008972 -
Blo04g00593 540 CDD CuRO_1_AAO_like_1 27 142 IPR034273 GO:0005507
Blo04g00593 540 SUPERFAMILY Cupredoxins 343 532 IPR008972 -
Blo04g00593 540 Pfam Multicopper oxidase 377 512 IPR011706 GO:0005507|GO:0016491
Blo04g00593 540 Gene3D - 342 536 IPR008972 -
Blo04g00593 540 PANTHER MULTI-COPPER OXIDASE TYPE I FAMILY PROTEIN-RELATED 16 534 - -
Blo04g00593 540 Pfam Multicopper oxidase 158 295 IPR001117 -
Blo04g00593 540 PANTHER MULTI-COPPER OXIDASE 16 534 IPR045087 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo04g00593 - - - rcu:8265945 914.064
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Blo04g00593 Blo15g00585 CCT
Blo04g00593 Blo15g00585 ECH
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo01g01619 Blo-Chr1:56096377 Blo04g00593 Blo-Chr4:5098059 0 dispersed
Blo03g00953 Blo-Chr3:35569930 Blo04g00593 Blo-Chr4:5098059 0 dispersed
Blo03g01398 Blo-Chr3:40477939 Blo04g00593 Blo-Chr4:5098059 6.91E-163 dispersed
Blo04g00593 Blo-Chr4:5098059 Blo18g00757 Blo-Chr18:20906782 0 dispersed
Blo01g01000 Blo-Chr1:28995509 Blo04g00593 Blo-Chr4:5098059 0 transposed
Blo17g00723 Blo-Chr17:21645693 Blo04g00593 Blo-Chr4:5098059 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g269 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone10ag1013 . . . . Blo04g00593 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi12g386 . Blo15g00585 Bda06g00283 . . . . . Cmo11g01893 . . . . . Sed01g0110 Cpe15g00849 Cpe04g00822 Bhi05g01339 Tan02g0350 Cmetu11g1229 Lac12g0581 Hepe02g0228 . . Cla02g00195 Cam02g0212 Cec02g0208 Cco02g0202 Clacu02g0203 Cmu02g0200 Cre02g0533 Cone3ag1333 Cone10ag1279 . . . Csa07g00353 . Cme01g00431 Blo04g00593 . Bda14g00829 . . . . . . . . Cma11g01819 . Car11g01506 . . . . . . . . . . . . . . . . . Lsi11g01447 . Chy01g00434 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000048 7 10 7 9 7 11 7 11 13 11 8 10 14 9 12 16 10 16 4 10 12 10 16 10 14 12 11 19 23 4 333
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo04g00593 Blo_Chr04 FPKM 1.992165 2.70134 2.430592 2.057357 2.046718 3.527303 2.915519 10.75121 8.222076 8.513869