Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo04g00597 ATGATAAACCCAAGAAGGCTCTCTTCCTTGGCCACAAAATGGCGGAAATTCGCTGCGAGAAAGAAGGAGAAGAATTCATCCAAAACGAGCGAAAAAGGGACGCATTTCACAACCGCAACTAAAGGTCATTTTGTGGTGTACACATCCGACGAAGGAAGATATGAAATTCCATTGGAGTATCTGAAAAGCCACATATTTGAAGAGCTCCTCAGAGTGTCAGAGGAAGAGTTTGGATTGCCCAAAAATGGACCCATCGCGTTGCATTGCGACAGTAAGTTCTTAGAATACGTTGTTTCGTTCGTACGAGGAGATTCGTCTGAAGAATTAGAGAAAGCTTTGCTCACTTCCATGGCGACATGCTGCTCACTTCCATGGCGACATGCCATAGGTCCGCCTTATGTTGTCTTTGTGTAG 414 44.93 MINPRRLSSLATKWRKFAARKKEKNSSKTSEKGTHFTTATKGHFVVYTSDEGRYEIPLEYLKSHIFEELLRVSEEEFGLPKNGPIALHCDSKFLEYVVSFVRGDSSEELEKALLTSMATCCSLPWRHAIGPPYVVFV 137
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 5132924 5133337 - BLOR13509 Blo04g00597 59625

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo04g00597 137 PANTHER SAUR-LIKE AUXIN-RESPONSIVE FAMILY PROTEIN 1 122 - -
Blo04g00597 137 PANTHER AUXIN-RESPONSIVE FAMILY PROTEIN 1 122 IPR003676 GO:0009733
Blo04g00597 137 Pfam Auxin responsive protein 13 100 IPR003676 GO:0009733
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo04g00597 - - - jre:109006507 140.969
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo04g00597 Blo-Chr4:5132924 Blo05g00826 Blo-Chr5:30000769 4.12E-08 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g262 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Blo04g00597 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005189 0 0 1 1 0 1 2 1 1 1 1 1 2 1 1 2 1 0 1 1 1 1 1 1 0 1 1 1 1 10 37
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo04g00597 Blo_Chr04 FPKM 10.229472 11.136857 9.874777 10.686131 10.707587 10.805995 11.069263 7.613471 7.190192 7.049119