Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo04g00598 ATGGCTTTGTTTATCTGCTTTCTCTTCTTTCTAGTTTCCTCTGTCACTGCTTGTGATCGCTGTGTGCATCAGACCAGAGCTGCTTATTTCTCCAAAGCTTCCACTCTTTCTTCTGGGGCTTGTGGGTATGGCTCATTATCCCTGGGCTTCAACCGTGGACATCTTGCAGCTGGTGTGCCTTCCCTTTACAAAGATGGAGCTGGTTGTGGTGCTTGCTTTCAGATACGATGCAAGAACACGACTCTTTGTACAAGATCGGGGACGAAAGTGATTTTGACTGATCTCAATACAAACAACAAAACAGATTTTGTTCTGAGCAGCAGAGCATTTACTGCAATGGCGCAAAACGGTATGACCAAGGACATTCTGAAACATGGAATTGTTGACGTTGAATATAAGAGAGTACCATGCGAGTATAAAAATCAAAACTTGGCCGTGCGAGTGGAAGAATCGAGCAAAAAACCTAATTATCTAGCAATCAAGTTCCTATACCAAGACGGTCAGACAGATATAGTTGGCGTTGATGTAGCTCAGGTGGGTTCTTCAAATTGGAGCTTCCTAAGCAGAAAGCATGGCGCTGTGTGGGATACAAGTCGAGTCCCAAACGGAGCTCTGCAATTTCGAATGGTGGTGACATCTGGGTATGATGGAAAATGGATCTGGGCAAAGAGTGTTCTTCCTGAAGACTGGAAATCAGGCGTCACATATGATTCTGGAGTTCGAATCAATGACATCGCACAAGAGGCAAGGTGTAAAACAAATGGAGATATTGCAGGAAGGGATAGGGATAGGGATAGGGTTAGGGATGGGGATAGGGATAGGGATATGGGGATTGGGGAAGCATTTAATTTCAATAAACACAAAAGCTCCGCTTCGCCTCCTTCCCTATCTATCTATGAAACTCGTAAAGATGGAGACTCTAAGTTTTCCTCTCCTCAGGTTTCGAGAAGGTTGGACCTTGTCTATGGAGGTGGAAGTATTGGGTTAATGGGTCTGGTTTCGCAAGCTGTTCATCGTGGGGGAAGAAAAGTTCTCGGGATCATTCCCCGGACGCTGATGAGCAAAGAGATAACCGGTGAAACAGTGGGGGAGGTGAGACCAGTTGCAGATATGCATCAAAGGAAGGCAGAAATGGCCCGCCACTCTGATTGTTTCATAGCTCTGCCAGGTGGGTATGGAACTTTGGAAGAGTTACTGGAAGTCATCACTTGGGCTCAGCTGGGCATCCATGATAAACCAGTGGGTTTGCTCAACGTCGATGGCTACTACAACAACCTACTAACTTTCATCGACAAAGCCGTGGACGATGGATTCATAAAGCCATCGCAACGCAACATAATAGTGTCAGCCCCGAACGCGCAAGAACTCGTTCAAAAACTAGAGGAGTACGTGCCTGCCCACGACGGAGCCATAGCCAAAGTCAGGTGGGAGGTCGAGCAACCAATGCCGCAAGTTGGAGGGTTTACTCCCACTGCCAGGCAGACACGGATTGCTTCATGA 1500 46.93 MALFICFLFFLVSSVTACDRCVHQTRAAYFSKASTLSSGACGYGSLSLGFNRGHLAAGVPSLYKDGAGCGACFQIRCKNTTLCTRSGTKVILTDLNTNNKTDFVLSSRAFTAMAQNGMTKDILKHGIVDVEYKRVPCEYKNQNLAVRVEESSKKPNYLAIKFLYQDGQTDIVGVDVAQVGSSNWSFLSRKHGAVWDTSRVPNGALQFRMVVTSGYDGKWIWAKSVLPEDWKSGVTYDSGVRINDIAQEARCKTNGDIAGRDRDRDRVRDGDRDRDMGIGEAFNFNKHKSSASPPSLSIYETRKDGDSKFSSPQVSRRLDLVYGGGSIGLMGLVSQAVHRGGRKVLGIIPRTLMSKEITGETVGEVRPVADMHQRKAEMARHSDCFIALPGGYGTLEELLEVITWAQLGIHDKPVGLLNVDGYYNNLLTFIDKAVDDGFIKPSQRNIIVSAPNAQELVQKLEEYVPAHDGAIAKVRWEVEQPMPQVGGFTPTARQTRIAS 499
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 5134562 5141803 + BLOR13510 Blo04g00598 59626
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Blo04g00598 499 Gene3D - 12 138 IPR036908 -
Blo04g00598 499 PRINTS Major pollen allergen Lol pI signature 163 178 IPR005795 GO:0005576|GO:0019953
Blo04g00598 499 PRINTS Major pollen allergen Lol pI signature 147 162 IPR005795 GO:0005576|GO:0019953
Blo04g00598 499 PRINTS Major pollen allergen Lol pI signature 57 68 IPR005795 GO:0005576|GO:0019953
Blo04g00598 499 PRINTS Major pollen allergen Lol pI signature 114 129 IPR005795 GO:0005576|GO:0019953
Blo04g00598 499 PRINTS Major pollen allergen Lol pI signature 214 231 IPR005795 GO:0005576|GO:0019953
Blo04g00598 499 PANTHER EXPANSIN-B3 5 252 - -
Blo04g00598 499 Pfam Possible lysine decarboxylase 330 460 IPR031100 -
Blo04g00598 499 PRINTS Expansin/Lol pI family signature 59 77 IPR007118 GO:0005576
Blo04g00598 499 PRINTS Expansin/Lol pI family signature 37 55 IPR007118 GO:0005576
Blo04g00598 499 PRINTS Expansin/Lol pI family signature 224 238 IPR007118 GO:0005576
Blo04g00598 499 PRINTS Expansin/Lol pI family signature 184 198 IPR007118 GO:0005576
Blo04g00598 499 PRINTS Expansin/Lol pI family signature 125 141 IPR007118 GO:0005576
Blo04g00598 499 SUPERFAMILY PHL pollen allergen 143 238 IPR036749 -
Blo04g00598 499 MobiDBLite consensus disorder prediction 255 311 - -
Blo04g00598 499 SUPERFAMILY MCP/YpsA-like 315 463 - -
Blo04g00598 499 Pfam Expansin C-terminal domain 145 227 IPR007117 -
Blo04g00598 499 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 38 142 IPR007112 -
Blo04g00598 499 SUPERFAMILY Barwin-like endoglucanases 6 141 IPR036908 -
Blo04g00598 499 SMART dpbb_1 56 132 IPR007112 -
Blo04g00598 499 MobiDBLite consensus disorder prediction 255 281 - -
Blo04g00598 499 Pfam Lytic transglycolase 56 132 IPR009009 -
Blo04g00598 499 Gene3D - 307 462 - -
Blo04g00598 499 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 156 238 IPR007117 -
Blo04g00598 499 Gene3D - 139 242 IPR036749 -
Blo04g00598 499 PANTHER EXPANSIN-LIKE A1-RELATED 5 252 - -
Blo04g00598 499 TIGRFAM TIGR00730: TIGR00730 family protein 318 463 IPR005269 GO:0009691|GO:0016787
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo04g00598 Blo-Chr4:5134562 Blo01g01168 Blo-Chr1:42841547 5.68E-94 dispersed
Blo03g00459 Blo-Chr3:14761283 Blo04g00598 Blo-Chr4:5134562 7.67E-60 transposed
Blo19g00238 Blo-Chr19:12243645 Blo04g00598 Blo-Chr4:5134562 6.28E-42 transposed
Blo13g00485 Blo-Chr13:25810114 Blo04g00598 Blo-Chr4:5134562 4.36E-158 wgd
Blo15g00397 Blo-Chr15:5588587 Blo04g00598 Blo-Chr4:5134562 1.41E-99 wgd
Blo17g00713 Blo-Chr17:20643412 Blo04g00598 Blo-Chr4:5134562 3.21E-89 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo04g00598 - - pop:7472089 422.935