Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo04g00601 ATGAACCTAGCGGCAAACTCCGCCTGTAACTCCTCCTCTCGCTTTCTCTTTTCTCTCATTTCCCTCTGGTTTCCTGAGAAATCATCTGGAATCATCTGCGTAAGGCTAATGATTCCTGATGATTTCTCGCTTTCTCTTTTCTCTCATTTGCGTAGGCGGATTAAACATTTCGATTTTGTGTTTGATTCCTCCGAGATTGCTTCCGCGCGATTCGTTCACAAGGTGCTTCAAGTCGAATTCACCGGAGCCATGGAATTGGAATATATATTTGTTTCCTTTGTGGTGCCTGGGAGTGGTGATTCGTTATCTAATCCTATTTCCTACCAGGGTGCTGATATTGACAATAGGATGGATACTTTTCCTTTCGGCATTCTTTCCAGTGAACTGGCTACTAAAAGATCCATTTGCCTCTTGTTTTCTGCAGAGGGGCTTAGTGGAGATGATATGCAGCTTCTTTGTTGCATCTTGGACTGGGGTTGTCAGCAGGTCTTTGTAGCCAATCACACTTCCATGATTGATTTTATCATCTTAGAACAGATGACTGCATTTGCTGTTATTATGCAGAAACATGCTGGCTGGGTTGGACTATTGCAAAGTACTATTTTGGAGAGTATAGGGTGTATTTGGTTTAATCGTACAGAGTTGAAGGACCGTGAAATTGTGGCAAAGAAGTTACGAGACCACGTGCAAGGGGTTGACAACAATCCTCTTCTCATATTTCCTGAGGGAACTTGTGTGAATAATCAGTACTCCGTTATGTTTAAGAAGGGTGCATTTGAACTTGACTGCTCTGTTTGCCCAGTTGCAATCAAGTACAATAAAATTTTTGTGGATGCATTTTGGAATAGCAGGAAGCAATCTTTCACGAAGCATCTTCTGCAGCTTATGACATCTTGGGCTGTTGTGTGTGATGTTTGGTACTTGGAGCCACAAAATTTGAAGCCTGGAGAGACAGCCATTGAATTTGCAGAGAGGGTGAGGGATATAATATGCATTCGAGCTGGTCTCAAGAAAGTGCCTTGGGATGGATATTTGAAACACTCCCGCCCAAGCCCAAAACATCAAGAAGGAAAGTAA 1077 42.71 MNLAANSACNSSSRFLFSLISLWFPEKSSGIICVRLMIPDDFSLSLFSHLRRRIKHFDFVFDSSEIASARFVHKVLQVEFTGAMELEYIFVSFVVPGSGDSLSNPISYQGADIDNRMDTFPFGILSSELATKRSICLLFSAEGLSGDDMQLLCCILDWGCQQVFVANHTSMIDFIILEQMTAFAVIMQKHAGWVGLLQSTILESIGCIWFNRTELKDREIVAKKLRDHVQGVDNNPLLIFPEGTCVNNQYSVMFKKGAFELDCSVCPVAIKYNKIFVDAFWNSRKQSFTKHLLQLMTSWAVVCDVWYLEPQNLKPGETAIEFAERVRDIICIRAGLKKVPWDGYLKHSRPSPKHQEGK 358
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 5193974 5197001 + BLOR13513 Blo04g00601 59629

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo04g00601 358 CDD LPLAT_LPCAT1-like 163 346 IPR045252 GO:0008374
Blo04g00601 358 PANTHER ACYLTRANSFERASE-LIKE 161 357 - -
Blo04g00601 358 Pfam Acyltransferase 162 270 IPR002123 GO:0016746
Blo04g00601 358 PANTHER PHOSPHOLIPID ACYLTRANSFERASE 161 357 - -
Blo04g00601 358 SMART plsc_2 162 273 IPR002123 GO:0016746
Blo04g00601 358 SUPERFAMILY Glycerol-3-phosphate (1)-acyltransferase 156 298 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo04g00601 K13506 GPAT3_4, AGPAT9, AGPAT6; glycerol-3-phosphate O-acyltransferase 3/4 [EC:2.3.1.15] - tcc:18607419 385.185
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Blo04g00601 Blo13g00482 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo04g00601 Blo-Chr4:5193974 Blo17g00811 Blo-Chr17:26069997 4.12E-09 dispersed
Blo13g00482 Blo-Chr13:25699684 Blo04g00601 Blo-Chr4:5193974 5.11E-142 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g239 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Blo04g00601 Blo13g00482 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0024859 0 0 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo04g00601 Blo_Chr04 FPKM 31.768328 35.50037 16.36072 20.176872 3.289862 4.078407 3.236537 0.0 0.0 0.0