Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo04g00602 ATGTTGAACTTAAATCAACCGGTAAACACATTGACCACGGGCACCGCAAACGAAGAAGTCTACAAGATTTTGATATATGATGGGTTTTGCCAGAGTATCCTCTCCCCGTTGATACATGTGAAGGATCTCCGCAAACACGGTGTTACTCTATATTTTCTGATTGACAAGGATCGGAAACCTGTTCACGATGTCCCAGCTGTGTACTTCGTTCAACCTAATAAGCTTAATATTGATCGTATTGTTGCTGATGCATCCCGTTCGCTCTACGACAGTTTCCATCTCAATTTTTCATCCTCCGTTCCCCGCCCTCTTCTTGAGGATCTTGCATCAGGAACGTTGAACTCGGAGTCCATTCATCGGATCTCAAGGGTGCATGATCAATATTTGGAGTTTGTGACATTAGAAGACAATTTGTTTTCTTTAGCACAGAAGTCTAGTTATGTCCAACTAAATGATCCCTCAGCTGGGGACCGTGAAATTGAGGAGATTGTGGAGAAGATTGCAAGTGGACTGTTCTGTGTTTTAGCGACACTGGCTGTGGTGCCAATAATCCGAAGTGCTCGAGGTGGTCCTGCTGAGATGGTTGCGTCTGCATTGGATCAGAAGTTGCGAGACCACTTGCTATCAAAAAACAATCTATTTACAGAGAGTGGTGGCTTTGTGACTCCTTTCCAGCGTCCAATTTTGTGCTTATTTGATCGTAACTTTGAGCTATCTGTAGCAATACAACACGATTTTAGGTATCGCCCTTTAGTGCATGATGTTCTTGGATTAAAGCTGAATAGGTTGAGTGTCCCAGGTGAAAAGGGAGGGATGAAGTCGTATGTGTTAGACAACGCAGATCCATTTTGGGTGGCAAATGAGTCTTTAGAATTCCCTGAAGTCGCAGTGGAGATTGAGACTCAACTGAATAAGTATAAGAAGGATGTTGATGAAGTAAACAGGAGGACTGGAGGGACTGATGGAGCCGAGTTTGATGGAACAGATTTGATTGGAAACACAAAACATTTAATGAATGCGGTGAACTCATTACCAGAGTTAACTGAGCGAAAGCAAGTGATAGATAAACACACAAATATTGCTACTGTATTGTTGGGAGAGATCAAGGAAAGGTCTCTTGATTCTTATGTGAAAAAGGAGAATGATATGTTAGTTCGAGGAAGCATTGATCGGGCTGAACTCTTAGGTGTTCTCAGAGGAAAAGGATCAAAAATGGATAAGCTTCGGTTTGCTCTTATATATCTAATATCAACGGAAAGTATTAATCAGGCTGAAGTGGAATCAATAGAAGCAGCCCTTAGGGAGTCAGAAGTTGATACTAGTGCATTCCAATATGTCAAGAAGATTAAGTCACTAAATGTTTCGTTGGCATCTGCAAATTCTGCCAGCAAAAGTAACATTGTTGACTGGGCCGAAAAGCTCTATGGACAATCTATCAGTGTCGTGACTGCTGGTGTGAAGAATCTATTATCTAGTGACCGGCAACTCGCATTGATAAGGACAGTAGAGGCCTTAATGGAGGGGAAGCCGAATCCTGAAATTGATTCTTACCTTGTGTTTGATCCTCGTGCTCCCAAGTCGAATTCAGGAACAGGAAGCAACCATTTAAGAGGACCCTTTAAAGAAGCAATTGTCTTCATGATTGGTGGTGGAAATTATATAGAGTTCAGGAGCTTGCAAGAATTTGTACAGTGTCAGCAGCCTGTGAAACATGTCGTTTATGGTACAACTGAGATTCTCACCGGAGGAGATTTTGTGGATCAGCTTGCATTATTGGGGCAGAAGATGGGATTGGGAGCCGACCCAGAATTCAATCATTTCATTCTGCTTCAGGAAGGGAAGTTGGTTGAGTCATGGTACTTGGATTTGTTTGCAAAGGTGTTTGATCAAGGGGCAGATAAGCCTAATGGAGCTCAAATGCACAGATGGCTCTCGAATATGGTGCAAAACAGCTATTTAGTTTTGACTGATAAATCCGAGAAAGAATTAAGCGAAAAGTATAACATTAACTTCTCCAACGGCCTCATGTCCTTTCCAGTGAACATTCCGGGAACTGCCTACCATAAATGTCTGCAGGATCATAAGAAGGCTTTGAAAATCATGATGAATGTGCTAAATGAGAGGCGAGACTCAGCGTCATTGGGGCACATTATGGGGATGCACTCGATCATATGA 2175 42.39 MLNLNQPVNTLTTGTANEEVYKILIYDGFCQSILSPLIHVKDLRKHGVTLYFLIDKDRKPVHDVPAVYFVQPNKLNIDRIVADASRSLYDSFHLNFSSSVPRPLLEDLASGTLNSESIHRISRVHDQYLEFVTLEDNLFSLAQKSSYVQLNDPSAGDREIEEIVEKIASGLFCVLATLAVVPIIRSARGGPAEMVASALDQKLRDHLLSKNNLFTESGGFVTPFQRPILCLFDRNFELSVAIQHDFRYRPLVHDVLGLKLNRLSVPGEKGGMKSYVLDNADPFWVANESLEFPEVAVEIETQLNKYKKDVDEVNRRTGGTDGAEFDGTDLIGNTKHLMNAVNSLPELTERKQVIDKHTNIATVLLGEIKERSLDSYVKKENDMLVRGSIDRAELLGVLRGKGSKMDKLRFALIYLISTESINQAEVESIEAALRESEVDTSAFQYVKKIKSLNVSLASANSASKSNIVDWAEKLYGQSISVVTAGVKNLLSSDRQLALIRTVEALMEGKPNPEIDSYLVFDPRAPKSNSGTGSNHLRGPFKEAIVFMIGGGNYIEFRSLQEFVQCQQPVKHVVYGTTEILTGGDFVDQLALLGQKMGLGADPEFNHFILLQEGKLVESWYLDLFAKVFDQGADKPNGAQMHRWLSNMVQNSYLVLTDKSEKELSEKYNINFSNGLMSFPVNIPGTAYHKCLQDHKKALKIMMNVLNERRDSASLGHIMGMHSII 724
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 5198894 5202821 - BLOR13514 Blo04g00602 59630

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo04g00602 724 PIRSF VPS45_Sec1 4 600 IPR001619 GO:0016192
Blo04g00602 724 Gene3D - 371 496 - -
Blo04g00602 724 Gene3D - 134 590 IPR027482 -
Blo04g00602 724 PANTHER VESICLE PROTEIN SORTING-ASSOCIATED 1 597 IPR001619 GO:0016192
Blo04g00602 724 Gene3D - 1 123 IPR043154 -
Blo04g00602 724 SUPERFAMILY Sec1/munc18-like (SM) proteins 3 595 IPR036045 -
Blo04g00602 724 Gene3D Syntaxin Binding Protein 1; Chain A, domain 2 245 489 IPR043127 -
Blo04g00602 724 PANTHER SEC1 FAMILY TRANSPORT PROTEIN SLY1-LIKE 1 597 - -
Blo04g00602 724 Pfam Sec1 family 22 588 IPR001619 GO:0016192
Blo04g00602 724 Coils Coil 296 316 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo04g00602 K19998 SCFD1, SLY1; sec1 family domain-containing protein 1 - twl:120015083 1038.48
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo04g00602 Blo-Chr4:5198894 Blo01g00017 Blo-Chr1:250641 2.03E-24 dispersed
Blo13g00480 Blo-Chr13:25686243 Blo04g00602 Blo-Chr4:5198894 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g228 . . . . . . . . . . . Cma20g00720 . Car20g00621 . . . . . . . . . . . . . . . . . . . . . . . . . Blo04g00602 . . . . . . . Sed05g3003 . Cmo20g00718 . . Car11g01407 . Cpe16g00345 Cpe05g01342 Bhi10g01246 Tan05g1061 Cmetu10g1643 . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002622 0 2 2 1 1 2 3 2 2 2 2 2 3 2 1 3 2 2 3 2 2 2 2 1 2 2 2 2 2 1 57
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo04g00602 Blo_Chr04 FPKM 20.419384 21.050032 57.938572 59.450123 6.676208 8.058133 7.805673 0.424127 0.535922 0.371202