Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo04g00603 GATATGGGTGCCGAGGGCGATTCTAGTGAGTCTAGAACTGGCGGTGACGGTGGAGAAGAGGTCGTGGTTAATATTCGCTGCTCGAATGGTACAAAATTTACGGTGAGTACGTGCCTCGAGTCAACGGTTGGGGCCTTCAAAGTACTTATAGCTCAGAATTCTGATATTCCTGCTGATCAGCAGCGATTGATCTACAAAGGCCGTATTTTGAAGGATGACCAGACCCTGGATAGTTATGGTATGCAGGCAGATCATACAGTTCACATGGTTCGTGGTTTTGCCCCAACTGCGTCAACGCCAACTGCTACAACCACTGCTGCTAATACTGAAACTGCTAACAACACTCCTGGTGTCACAAGAGGTGTCGGTTCCACTGATGGGGGAGCTTTAGGGAATGCAACACCTTTATTTCCTGGACTTGGTTTCAATCCACTAGGTGGAGGTGCAGCATCTGGTTTATTTGGAGCTGGTCTACCAGAATTTGAGCAAGTGCAGCAACAACTGACTCAGAACCCAAACATGATGAGGGAAATTATGAACATGCCTGCCATTCAGAACCTTATGAATAATCCTGATCTGATGCGAACTTTGATTATGAGCAATCCTCAAATGCGGGAAATTATTGATAGAAATCCAGAACTTGGTCATATTCTTAATGATCCTGGAATTCTCAGGCAGACTTTAGAAGCTGCAAGGAACCCAGAGCTTATGCGGGAGATGATGAGAAACACTGACAGGGCAATGAGTAATATTGAATCAAGTCCCGAAGGATTCAATATGCTGAGGCGTATGTATGAAAATGTCCAAGAGCCATTTATGAATGCTACAACAATGGCTGGAAACAACGGAAATGATTTGGGTTCAAACCCATTTGCAGCTCTGTTAGGAAACGCAGCTGGGGCCCAAGCTAGGGCTGGGTCTAATAATACTTCAGTCACTAGTACTGAGACAAATACCGGGACTACTGCTCCTAACACAAATCCACTTCCTAATCCATGGGGTGGAGGAAATCAAGCAAACCCCACAAGGCCCAATCCAGCAGGAGAATCTAGGACTCCTAGTATTGGTAATATAGGAGGACTTGGTCTTCCTGATATGGAGCAGATGATGAGTGGTGGGCCTGATTCGGCCATGTTGAATCAGTTTTTGCAAAACCCCGCAATATCACAGATGATGGAGAGCATGCTCTCTAATCCTCAATACATGAATCAGATTCTCAGTCTCAACCCCCAGTTACGGAGCATGACTGACATGAATCCTCAATTAAGAGAAATGATGCAAAATCCAGAGCTTCTTCGCCAGTTAACTAATCCGGAGACAATGCAGCAAATGCTATCACTACAGCAATCGCTTTTATCTCAGCTCGGAACTCCCAATAATGCCGGATTAGAGTTGTTGATGAACATGTTTGGTGGTCTTGGAGCTGGTGGAATGACTGTTCCTAGCAATCCCAATGTCCCCCCAGAAGAACTATACGCAACACAGCTCTCGCAGCTTCAAGAGATGGGATTTTTTGACAATCAAGAGAACATAAGGGCCCTTAGAGCCACCGCAGGGAACGTCCATGCTGCAGTAGAGCGACTTCTGGGGAATCCCGGGCCGTAA 1605 46.04 DMGAEGDSSESRTGGDGGEEVVVNIRCSNGTKFTVSTCLESTVGAFKVLIAQNSDIPADQQRLIYKGRILKDDQTLDSYGMQADHTVHMVRGFAPTASTPTATTTAANTETANNTPGVTRGVGSTDGGALGNATPLFPGLGFNPLGGGAASGLFGAGLPEFEQVQQQLTQNPNMMREIMNMPAIQNLMNNPDLMRTLIMSNPQMREIIDRNPELGHILNDPGILRQTLEAARNPELMREMMRNTDRAMSNIESSPEGFNMLRRMYENVQEPFMNATTMAGNNGNDLGSNPFAALLGNAAGAQARAGSNNTSVTSTETNTGTTAPNTNPLPNPWGGGNQANPTRPNPAGESRTPSIGNIGGLGLPDMEQMMSGGPDSAMLNQFLQNPAISQMMESMLSNPQYMNQILSLNPQLRSMTDMNPQLREMMQNPELLRQLTNPETMQQMLSLQQSLLSQLGTPNNAGLELLMNMFGGLGAGGMTVPSNPNVPPEELYATQLSQLQEMGFFDNQENIRALRATAGNVHAAVERLLGNPGP 534
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 5206603 5211800 + BLOR13515 Blo04g00603 59631

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo04g00603 534 PANTHER UBIQUITIN DOMAIN-CONTAINING PROTEIN DSK2A-RELATED 2 533 - -
Blo04g00603 534 Gene3D - 474 534 - -
Blo04g00603 534 Gene3D - 196 254 - -
Blo04g00603 534 Pfam UBA/TS-N domain 492 528 IPR015940 -
Blo04g00603 534 SMART ubq_7 21 92 IPR000626 GO:0005515
Blo04g00603 534 PANTHER UBIQUILIN 2 533 - -
Blo04g00603 534 PRINTS Ubiquitin signature 73 94 IPR019956 -
Blo04g00603 534 PRINTS Ubiquitin signature 52 72 IPR019956 -
Blo04g00603 534 SMART uba_6 492 530 IPR015940 -
Blo04g00603 534 SUPERFAMILY UBA-like 488 530 IPR009060 GO:0005515
Blo04g00603 534 SMART CBM 409 444 IPR006636 -
Blo04g00603 534 SMART CBM 201 240 IPR006636 -
Blo04g00603 534 SMART CBM 147 188 IPR006636 -
Blo04g00603 534 SMART CBM 354 405 IPR006636 -
Blo04g00603 534 Gene3D - 18 106 - -
Blo04g00603 534 CDD UBA_PLICs 492 530 - -
Blo04g00603 534 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 487 531 IPR015940 -
Blo04g00603 534 MobiDBLite consensus disorder prediction 305 352 - -
Blo04g00603 534 ProSiteProfiles Ubiquitin domain profile. 21 90 IPR000626 GO:0005515
Blo04g00603 534 MobiDBLite consensus disorder prediction 98 117 - -
Blo04g00603 534 MobiDBLite consensus disorder prediction 305 356 - -
Blo04g00603 534 Pfam Ubiquitin family 23 90 IPR000626 GO:0005515
Blo04g00603 534 SUPERFAMILY Ubiquitin-like 15 104 IPR029071 -
Blo04g00603 534 CDD Ubl_Dsk2p_like 21 93 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo04g00603 K04523 UBQLN, DSK2; ubiquilin - qsu:112012853 784.252
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Blo04g00603 Blo13g00475 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo04g00603 Blo-Chr4:5206603 Blo18g00755 Blo-Chr18:20832469 1.53E-09 dispersed
Blo13g00475 Blo-Chr13:25630692 Blo04g00603 Blo-Chr4:5206603 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g180 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Blo04g00603 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi3g281 . . . . . Bpe12g00148 . . Cmo19g00813 Cmo11g01783 . . . . Sed05g2177 Cpe04g00628 Cpe15g00637 Bhi05g01590 Tan02g0585 Cmetu01g0562 . . . . Cla02g00354 Cam02g0363 Cec02g0364 Cco02g0371 Clacu02g0354 Cmu02g0351 . Cone12ag1271 Cone8ag1325 . . . Csa07g00180 . . Blo04g00603 Blo13g00475 . Bda14g00644 . . Bma03g00635 . . . . . Cma19g00792 Car11g01410 Car19g00609 . . . . . . . . . . . . . . . . Lsi11g01279 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005812 1 1 2 1 2 1 1 1 1 1 1 1 2 1 1 2 1 4 2 0 1 1 0 1 1 1 1 2 1 3 39
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo04g00603 Blo_Chr04 FPKM 15.863248 18.352518 12.360771 13.239499 14.325111 9.865714 9.977152 13.842351 10.630378 10.113228