Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo04g00604 ATGGTTATGAGCCCAGCAACTAAGCTCACTAAAGCTCTGCTCCTTAACACCGCCAACCCGAAACTCGCATGGTGCCTCGTCAGGCGCATTCTCTCCTCACCCTCCTCGGCCCCTCTATCCCTCCCCTCCATATCCGCCATTGCTCGGATTCTTATTCCTCACAGAATGCTCCGCGAAATTGACCATCTCCATCACCTTCTACTCCTCTCGCACCACCTTGACACTGCCCTTCTTTCTCTTTTTTGTCTGGTCCGGATGTTGGCTCTATCTGGTCTCTCTGATCAAGCTCTTTCCCATTTTAAAACCCTTAGATCCCGGTTTCCGGAAAATCCTCCTCCCATTTTTTTGTATAATTTGCTCCTCCAGAACTTTCTGAAGAAGAATTCTGCAGACTCTGTCACTTGGCTGTATAAGGATATGATTCTTGCTAAGGTTTCTCCTCAAACTCACACTTTCAATCTTTTGATCTGTGCTTTATGTGATTCGGGCCAGATAGAAGCTGCAAGGGAGGTGTTTGATAAAATGTCTGAGAAGGGTTGTGAACCAAATGCTTACACTATTGAGATTTTGGTTCGTGGGTATTGTAGAGCCAGTCTTGATAACCTAGGGTTGGAACTTGTGAATGAGTTGAGGGGTGGTGGCTTTTTGCCCAGTAATGTTGTCTACAATACTTTGATATCTAGTTTTTGCAGGGAAGGTCAGACTGATAAGGCTGAGATGTTGGTCGAGTTAATGAAAGAGGATGGTCTGTTTCCAGATGTTGTTACTTTCAATTCAAGAATAGCAGCTCTTTGTAGAGATGGGCAAATTTTGGAAGCGTCTAGAATTTTTAGGGATATGCAAATTGATGATTATTTGGGGTTGCCGCGGCCTAATGTTGTCACCTATAATATAATGCTTAAGGGGTTTTGCGATATAGGAATGTTGGCGGAAGCAAAGAGTTTGTTTGAATCTATGAGAAGCGGTGGAGATTTCTCAAACTTGGAAAGTTATAATATATGGTTGTTGGGTTTGGTTAGGAACGGGAAGCTTTTGGAGGCACGTTCAATTCTTAAAGAGATGGCTGATGAGGGGATAGCACCTAGTGTTTGGTCCTATAACATTGTGCTGAATGGACTTTGTAAAAGCGGACTACTTTCTGATGCTGTAACGTTAATAAGCTTAATGAGAATTAATGGCTTCTACCCAGATATAGTAACCTATAGCACCTTACTACATGGATATTGCCGTAAGAGAAAGGTACTTGAAGCTAATCATGTTCTTCATCAAATGGCTCAAAATGGTTATTCTCCAAATAATTATACATGTAACATTTTGATTCACAGTATTTGGAAAGAAGGGAGAACATCAGAAGCAGAGAAATTTCTGCAAAAGATGAATGGGAGAGATAATGTCTTGGACACCATAACATGCAATATTGTGATTGATGGCCTTTGTAAAATTGGGAAAGTGGACGAAGCTATTGAAATGATGAACAGGATGTGGACTCATGGACAGGCTGCCCTCGATAGTCTAGGAAACTCTTTTACACGCTTGCTTGACAATAGTGATGATGGCAAGAAATGTAGGCCTGATTTGATTACATATTCAACCATAATTAAAGCGCTGTGCAAGTCTGGGAGACTTGATGAGGCAAAAAAAAAGTTCACTGAGATGTCTGGGAAAGGTTTGCATCCTGATACGATGATCTTCAATACTTTCATTCTGAGTTACTGTAAAGAGGGAAAGATATCTTCTGCTTTTCGAGTTTTGAAGGACATGGAAAATAAAGGCTGCAACAAAAGCATTCATACCTATAATTCGCTGATACTGGGCTTAGGTAGAAAAAACCAAATATTTGAAATGTATGGTCTTCTAAATGAGATGAGAGAAAGAGGTATTTCTCCTAATGTTTGGACATATAATAATATGATCAGCAGTTTATCTGAAGGAGGGCGACTTGGAGATGCTACTTCACTTTTGGACGAAATGCTACAGAAGGAAATATTTCCAAATATATCTTCCTTCAGTATTTTAATCAGAGCCTTTTGCAAATCATGTGATTTTGTAGCAGCTATGGAGATATTCGAGATAGCCCTGACTGTATGTGGCTACCAGCAACCCTTGTATAGCTTGATGTTTAATGAGTTACTTTCTGGAGGAGAAGTTTCCAAAGCAAAAGAATTGTATGAGGCTGCATTGGATGGATCTTTTGACTTGGATAACTTCCTGTATAAGGATCTCATCGAAAAACTTTGCTGTGATGAAAAGTTAGAGGATGCTTGTTTAGTTCTTCATAAGATGATCGATAAAGGGTATGGATTTGATCCTGCTCCGTTGATGTTAGTAATTGATGAACTAGGAAAGAGGGGAAACAAACGTGGGGCTAATGAACTTGCAGAAAAGATGACGAGAATGGCTTCAGAGAGTAGGGTTGTAAATAAGATTCATCGAAGCCGGAGGAAGATCAGTGGTAAAAAGTCAAATAAAAATGAAGAAAGTGATTGGCACAATATAATACACAGAGATGATGGAAGTGGAATTGCTCAGAAAACTCTTAATCGGGTGCAGAAAGGCTGGGGTCGGGGTAACATATTAAGGCCGCAGCGCCAGAAAAATGGCATGCTTGATTCCTGGGATGCTGATTTCTAG 2631 40.59 MVMSPATKLTKALLLNTANPKLAWCLVRRILSSPSSAPLSLPSISAIARILIPHRMLREIDHLHHLLLLSHHLDTALLSLFCLVRMLALSGLSDQALSHFKTLRSRFPENPPPIFLYNLLLQNFLKKNSADSVTWLYKDMILAKVSPQTHTFNLLICALCDSGQIEAAREVFDKMSEKGCEPNAYTIEILVRGYCRASLDNLGLELVNELRGGGFLPSNVVYNTLISSFCREGQTDKAEMLVELMKEDGLFPDVVTFNSRIAALCRDGQILEASRIFRDMQIDDYLGLPRPNVVTYNIMLKGFCDIGMLAEAKSLFESMRSGGDFSNLESYNIWLLGLVRNGKLLEARSILKEMADEGIAPSVWSYNIVLNGLCKSGLLSDAVTLISLMRINGFYPDIVTYSTLLHGYCRKRKVLEANHVLHQMAQNGYSPNNYTCNILIHSIWKEGRTSEAEKFLQKMNGRDNVLDTITCNIVIDGLCKIGKVDEAIEMMNRMWTHGQAALDSLGNSFTRLLDNSDDGKKCRPDLITYSTIIKALCKSGRLDEAKKKFTEMSGKGLHPDTMIFNTFILSYCKEGKISSAFRVLKDMENKGCNKSIHTYNSLILGLGRKNQIFEMYGLLNEMRERGISPNVWTYNNMISSLSEGGRLGDATSLLDEMLQKEIFPNISSFSILIRAFCKSCDFVAAMEIFEIALTVCGYQQPLYSLMFNELLSGGEVSKAKELYEAALDGSFDLDNFLYKDLIEKLCCDEKLEDACLVLHKMIDKGYGFDPAPLMLVIDELGKRGNKRGANELAEKMTRMASESRVVNKIHRSRRKISGKKSNKNEESDWHNIIHRDDGSGIAQKTLNRVQKGWGRGNILRPQRQKNGMLDSWDADF 876
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 5227869 5230935 - BLOR13516 Blo04g00604 59632

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo04g00604 876 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 218 252 IPR002885 -
Blo04g00604 876 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 560 594 IPR002885 -
Blo04g00604 876 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 397 431 IPR002885 -
Blo04g00604 876 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 362 396 IPR002885 -
Blo04g00604 876 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 630 664 IPR002885 -
Blo04g00604 876 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 595 629 IPR002885 -
Blo04g00604 876 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 525 559 IPR002885 -
Blo04g00604 876 Pfam PPR repeat 291 320 IPR002885 -
Blo04g00604 876 Pfam PPR repeat 466 494 IPR002885 -
Blo04g00604 876 Pfam PPR repeat 521 553 IPR002885 -
Blo04g00604 876 Pfam PPR repeat 738 765 IPR002885 -
Blo04g00604 876 PANTHER OS02G0132100 PROTEIN 6 840 - -
Blo04g00604 876 Gene3D Tetratricopeptide repeat domain 355 425 IPR011990 GO:0005515
Blo04g00604 876 Gene3D Tetratricopeptide repeat domain 497 589 IPR011990 GO:0005515
Blo04g00604 876 Gene3D Tetratricopeptide repeat domain 288 354 IPR011990 GO:0005515
Blo04g00604 876 Gene3D Tetratricopeptide repeat domain 426 496 IPR011990 GO:0005515
Blo04g00604 876 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 327 361 IPR002885 -
Blo04g00604 876 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 253 287 IPR002885 -
Blo04g00604 876 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 148 182 IPR002885 -
Blo04g00604 876 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 183 217 IPR002885 -
Blo04g00604 876 PANTHER RESPIRATORY COMPLEX I CHAPERONE (CIA84), PUTATIVE (AFU_ORTHOLOGUE AFUA_2G06020)-RELATED 6 840 - -
Blo04g00604 876 Gene3D Tetratricopeptide repeat domain 699 853 IPR011990 GO:0005515
Blo04g00604 876 TIGRFAM PPR: pentatricopeptide repeat domain 399 432 IPR002885 -
Blo04g00604 876 TIGRFAM PPR: pentatricopeptide repeat domain 527 561 IPR002885 -
Blo04g00604 876 TIGRFAM PPR: pentatricopeptide repeat domain 469 498 IPR002885 -
Blo04g00604 876 TIGRFAM PPR: pentatricopeptide repeat domain 330 362 IPR002885 -
Blo04g00604 876 TIGRFAM PPR: pentatricopeptide repeat domain 563 593 IPR002885 -
Blo04g00604 876 TIGRFAM PPR: pentatricopeptide repeat domain 150 184 IPR002885 -
Blo04g00604 876 TIGRFAM PPR: pentatricopeptide repeat domain 220 254 IPR002885 -
Blo04g00604 876 TIGRFAM PPR: pentatricopeptide repeat domain 255 281 IPR002885 -
Blo04g00604 876 TIGRFAM PPR: pentatricopeptide repeat domain 365 398 IPR002885 -
Blo04g00604 876 TIGRFAM PPR: pentatricopeptide repeat domain 668 690 IPR002885 -
Blo04g00604 876 TIGRFAM PPR: pentatricopeptide repeat domain 597 631 IPR002885 -
Blo04g00604 876 TIGRFAM PPR: pentatricopeptide repeat domain 294 322 IPR002885 -
Blo04g00604 876 TIGRFAM PPR: pentatricopeptide repeat domain 633 665 IPR002885 -
Blo04g00604 876 Pfam PPR repeat family 559 603 IPR002885 -
Blo04g00604 876 Pfam PPR repeat family 329 375 IPR002885 -
Blo04g00604 876 Pfam PPR repeat family 217 258 IPR002885 -
Blo04g00604 876 Pfam PPR repeat family 396 442 IPR002885 -
Blo04g00604 876 Pfam PPR repeat family 629 678 IPR002885 -
Blo04g00604 876 Pfam PPR repeat family 147 196 IPR002885 -
Blo04g00604 876 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 292 326 IPR002885 -
Blo04g00604 876 Gene3D Tetratricopeptide repeat domain 54 198 IPR011990 GO:0005515
Blo04g00604 876 Gene3D Tetratricopeptide repeat domain 590 697 IPR011990 GO:0005515
Blo04g00604 876 Gene3D Tetratricopeptide repeat domain 199 287 IPR011990 GO:0005515
Blo04g00604 876 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 467 501 IPR002885 -
Blo04g00604 876 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 432 466 IPR002885 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo04g00604 - - - qsu:112012863 1133.63
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo04g00604 Blo-Chr4:5227869 Blo17g00090 Blo-Chr17:691278 1.68E-44 dispersed
Blo04g00604 Blo-Chr4:5227869 Blo04g00629 Blo-Chr4:5514311 2.66E-11 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g286 . . . . . . . . . . . . . . Sed05g2175 . . Bhi05g01588 Tan02g0581 Cmetu01g0188 Lac12g0483 Hepe02g0372 . . Cla02g00351 Cam02g0359 Cec02g0360 Cco02g0366 Clacu02g0351 Cmu02g0348 Cre02g0679 Cone12ag1274 . . . . Csa07g00182 . Cme01g01150 Blo04g00604 . . Bda14g00645 Bpe15g00786 . Bma03g00636 . . . . . . . Car19g00612 . . . . . . . . . . . . . . . . Lsi11g01282 . Chy01g00597 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012269 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 29
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo04g00604 Blo_Chr04 FPKM 10.203449 10.156814 10.458373 11.786534 8.653452 7.57132 9.341239 13.022579 12.284192 14.416721