Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo04g00606 ATGGGTAAGGTAGTGGAGAGGAGGAAGAAGAAGAAAGGACGGCCCTCTCTATTAGATCTTCAAAAACGCACAATCAAAGAACAGCAGCAGCTCCAGCAGAAAAACTCCAACCACAACTTTGACACTCGTTCTAGCCCTAATTCCAGAATTACCACTACCGTTCGGCGATCTACTCGCCGAAATACCTTCCCCGACACCCTCTCTCCGGAGGAGGAGGAGGTGGATTTTGACGACCCCGAAGACGACGAAGAATTGACTGGGAAGCACCGTGAGAAGAAGCTCAAGCTTGTCCTTCGATTGACATCTCAGAAATCTTCTTTGAATTCGTCGTCTTTGAATTCAGGTGGCCTGGATTCGAATGCGGAGGTGGATGACAACGATTCAGCTAATAAGAAGCGAAAGATCAATGCAATCGGAGATGGATCTGGGCTCGGAAACCTCGAAAAGGGTGAAAAGTCTAATTCTGCTGCAAAACCGACAAAAACCCTCCAAGGGGCGGAGTTGGATTTTGGACCCTCGACCCCTTTGCCAGATGAGAAGCTTTTACTGTTCATCCTGGACAGGCTTCAAAAGAAGGACACATATGATGTGTTTTCTGAACCAGTGGACCCGGAGGAGCTTCCCGATTACCATGAAGTTATTAAGCACCCGATGGATTTTGCGACAGTGAGGAAGAAGCTTGCCAGCAGAGCTTATGCCAAATTGGAAGAGTTCGAGAAAGACGTCTTCTTAATCTGCACTAATGCAATGCAGTACAACGCTCCAGACACCATCTATTTTAGGCAGGCACGATCCATACTGGAATTGGCAAAAAAGAGCTTCAGGAATTTAAGACAAGATAGTGATGATAATGAACCAGAACCTAAAGTAGTCAGGAGAGGAAGACCACCGACGAAGAATTTGAAACAGCCAATTTGTCAGTCGTTCTCCGAACGCGCTAGTTCAGAGTTCTCGGATGCTACCCTTGCTACTGGTGGAGAAAATAGATCCTATGATCTGAGAAAAGGACCTCACCTCTCGGAGAAGGCTGGTTCGGCTGAGTTTTTGGGGAAATTCCCTGGTTCTCGGATTACTGACGCCAATTCAAATTGGTTGAATGAAAACAGATTTGAGAGAAATGATGATTTTACTGGTTCTTTGATGAAAAATTACTCGACAAAGCAAGGGAAAAAACATATTATGCTAGATGAGAACAGGCGCAACTCATATAAGCAATTCCAATTATCTGCTGGTGGACGAGAGTCGTCAGTTATGACTACATTTACGCGAGAGAGAAAGCAACTAATGCCTGTGGGGCTTCACACGGACCATGGTTATGCCAGAAGCCTTGCTCGATTTGCTGCCAATCTTGGACCTATTGCTTGGAAAGTTGCTTCTAAGAAAATTGAAAAATCCTTGTCTGCCGGAATCAAGTTTGGCCGTGGTTGGGTTGGAGAAAACGATGTCGTACCGACCAGACCATTGCTATCAACATCAGCTGAAGGCCAATTATCAATATTGCAGCCCTTTCTTGGTCAGAATAACTCATCTTCAGCTGCAGCTTCTTCCACTCCTGATATGAAGGATGTTAGTTTACCCAAAAATCCCGACGAGAACACTTCCTCGAAGAAGGATGGACCTTCCATGGATCCCGTCTTAGAAAAAAATGTAAGCAAGCCTCCTTCGGAACCCGTCCCTACCAAATCTCCTGAACCTCTCACCGGAAAAGGGTATAATATACATAACAGCAGTATGAATCCAATTCAGTCCAAACCTTCATTTCAGGTTCATAAAAGTCATTTGCAACCTGTTCTGAATGGATGTAGTAATAGCGCCTTTGGCTTCAACCACCCTTCAGATCAACTAGCAAAACTAATCGGATCAGCGGGTTTGAACTTGCAGCCATCTCAAATTCTTCAGACAATATGTAGAACTACTAACACTGACTCCACAATGACGCCGAGCAGTGTAATTCGACCCGACCCCGAGTTTTCTCAATGCACAAGTAAGATAAATTCAGGTAGTTCGTTTAAACGGGATGAGGTGTTGACGCCTCAAACCAAAGTTGAGCCAGTTCCTCCAGATCTTAATGTCGGATTTCAGTCTCCAGGGTCACCTAGCTCGAGCCGAGTCGACTCAACAGCGCAGCCTGACTTAGCGTTGCAGCTCTGA 2151 45.51 MGKVVERRKKKKGRPSLLDLQKRTIKEQQQLQQKNSNHNFDTRSSPNSRITTTVRRSTRRNTFPDTLSPEEEEVDFDDPEDDEELTGKHREKKLKLVLRLTSQKSSLNSSSLNSGGLDSNAEVDDNDSANKKRKINAIGDGSGLGNLEKGEKSNSAAKPTKTLQGAELDFGPSTPLPDEKLLLFILDRLQKKDTYDVFSEPVDPEELPDYHEVIKHPMDFATVRKKLASRAYAKLEEFEKDVFLICTNAMQYNAPDTIYFRQARSILELAKKSFRNLRQDSDDNEPEPKVVRRGRPPTKNLKQPICQSFSERASSEFSDATLATGGENRSYDLRKGPHLSEKAGSAEFLGKFPGSRITDANSNWLNENRFERNDDFTGSLMKNYSTKQGKKHIMLDENRRNSYKQFQLSAGGRESSVMTTFTRERKQLMPVGLHTDHGYARSLARFAANLGPIAWKVASKKIEKSLSAGIKFGRGWVGENDVVPTRPLLSTSAEGQLSILQPFLGQNNSSSAAASSTPDMKDVSLPKNPDENTSSKKDGPSMDPVLEKNVSKPPSEPVPTKSPEPLTGKGYNIHNSSMNPIQSKPSFQVHKSHLQPVLNGCSNSAFGFNHPSDQLAKLIGSAGLNLQPSQILQTICRTTNTDSTMTPSSVIRPDPEFSQCTSKINSGSSFKRDEVLTPQTKVEPVPPDLNVGFQSPGSPSSSRVDSTAQPDLALQL 716
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 5238852 5243426 - BLOR13518 Blo04g00606 59634

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo04g00606 716 MobiDBLite consensus disorder prediction 569 584 - -
Blo04g00606 716 Gene3D - 177 293 IPR036427 GO:0005515
Blo04g00606 716 PANTHER BROMODOMAIN CONTAINING PROTEIN 1 716 - -
Blo04g00606 716 ProSiteProfiles Bromodomain profile. 190 260 IPR001487 GO:0005515
Blo04g00606 716 MobiDBLite consensus disorder prediction 1 20 - -
Blo04g00606 716 MobiDBLite consensus disorder prediction 669 716 - -
Blo04g00606 716 MobiDBLite consensus disorder prediction 104 123 - -
Blo04g00606 716 MobiDBLite consensus disorder prediction 1 16 - -
Blo04g00606 716 Pfam Bromodomain 185 264 IPR001487 GO:0005515
Blo04g00606 716 MobiDBLite consensus disorder prediction 506 584 - -
Blo04g00606 716 PANTHER BROMODOMAIN AND WD REPEAT-CONTAINING PROTEIN 1-LIKE 1 716 - -
Blo04g00606 716 CDD Bromodomain 178 272 - -
Blo04g00606 716 MobiDBLite consensus disorder prediction 506 530 - -
Blo04g00606 716 MobiDBLite consensus disorder prediction 68 82 - -
Blo04g00606 716 MobiDBLite consensus disorder prediction 277 294 - -
Blo04g00606 716 MobiDBLite consensus disorder prediction 26 64 - -
Blo04g00606 716 SUPERFAMILY Bromodomain 174 283 IPR036427 GO:0005515
Blo04g00606 716 MobiDBLite consensus disorder prediction 26 92 - -
Blo04g00606 716 MobiDBLite consensus disorder prediction 104 171 - -
Blo04g00606 716 SMART bromo_6 171 279 IPR001487 GO:0005515
Blo04g00606 716 MobiDBLite consensus disorder prediction 277 306 - -
Blo04g00606 716 MobiDBLite consensus disorder prediction 693 716 - -
Blo04g00606 716 PRINTS Bromodomain signature 193 206 IPR001487 GO:0005515
Blo04g00606 716 PRINTS Bromodomain signature 207 223 IPR001487 GO:0005515
Blo04g00606 716 PRINTS Bromodomain signature 223 241 IPR001487 GO:0005515
Blo04g00606 716 PRINTS Bromodomain signature 241 260 IPR001487 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo04g00606 K22184 BRD9; bromodomain-containing protein 9 - qsu:111985563 703.36
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Blo04g00606 Blo13g00473 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo04g00606 Blo-Chr4:5238852 Blo12g00852 Blo-Chr12:26794248 8.33E-103 dispersed
Blo06g00428 Blo-Chr6:24678830 Blo04g00606 Blo-Chr4:5238852 6.80E-12 transposed
Blo07g00901 Blo-Chr7:27906524 Blo04g00606 Blo-Chr4:5238852 1.55E-89 transposed
Blo13g00473 Blo-Chr13:25617984 Blo04g00606 Blo-Chr4:5238852 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g294 . . . . . Bpe12g00149 . . Cmo19g00818 Cmo11g01786 . . . . . Cpe04g00631 Cpe15g00642 Bhi05g01248 Tan02g0781 . . . . . Cla02g00347 Cam02g0356 Cec02g0357 Cco02g0363 Clacu02g0348 Cmu02g0345 Cre02g0677 . . . . . Csa07g00186 . Cme01g01147 Blo04g00606 Blo13g00473 . Bda14g00648 Bpe15g00784 . Bma03g00637 Bma08g00717 . . . Cma11g01333 Cma19g00798 Car11g01413 Car19g00614 . . . . . . . . . . . . . . . . Lsi11g01285 . Chy01g00594 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005813 1 1 2 2 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 2 0 39
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo04g00606 Blo_Chr04 FPKM 19.876801 17.798254 31.237286 30.393145 27.271288 28.788591 25.544216 24.760605 27.108379 23.337954