Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo04g00607 ATGGCGACGGCGCATAATCAAGCGCCGAATACGGATCTATTTGATGCCTATTTTCAGAAAGCTGATTTGGACCGGGATGGTCGTATCAGTGCCGCTGAAGCTGTCGCTTTCTTCCAAGGCTCTGGATTGTCTAAACAGGTCCTTGCGCAGATATGGGCATCGGCTGATCCAAGACAGATTGGTTTCCTTGGTCGATCAGAGTTTTATAATGCCCTTAAACTGATTACTGTGGCACAAAAAAAGTTGGAACTAACTCCAGAAATTGTAAAAACAGCGTTATATGGACCAGCTGCAGCTAAAATACCACCACCACAAATGAATGTAACAGCCATGCCACCATCTCAGTGCAATATTGCTGCAGCATCAACTGCCTCTCAGATTGGGACCGGCACTCCAACATCCTCCCAAAACATTGAATTTAGAGGACCGCAAGTTGCCCCAGCTGTTGGTATAAATCAGCAACAATTTTCTTTTCAAGCAAATCAATTAATAAGGCCACCACAATCAACATCAATGACTAATTCCATGCCTGCCCAAATTATTGGCACACTAGGATTTCCAGAAAGTGGCATTGTAGGAAGGAATTCCTCTCCAAGCACTAGCATCTCGACTGATTGGGTTGGTGGGCGAGTTGGTGGAGTTCAGGGAATTCCCTCACAAGTTCCTGACAAAGGAGTTGCTTCTTCCACTTCCCAACTTGGGTTTGGAGTATCAACATCAGCATCCACAGCTTCACTACCACCTAGACCTCCATCCTCTGGGATAAGAGCTTCTGGACCACCAGCTAAGGATTCGAGAATAGAGGGTATTTCTGGTAATGGTGTTACTTCGAACTCATTTTTTGGAGATGATGTATTTTCTGCTACTCCACCTCCCCCGAGGCAAGATTCTTCCTCTGGGAGCATTTTATCGGCCAATATTCGAAGACCTCCTGGGATACATTCTTCATTAAGTCCAAGTGTTGATTCTACCGGGAGTTCATTCCCCAAGCAACCTGATGGTGGTCACCTCAAGCAGCCTCAGGCAGTTTTCAGGTCAAATCAACAGGTCTTGACTCAGCCTTCTTTGTCTGGACATTCTCCTGGGTTGGAGATCTCTGTTTCTCGTCAGTCCCCACATCCATGGCCTAGCATGACACAGAATGATGTTCAGAAGTATACTAAAGTGTTTGTTGAGGTAGACAAAGATAAAGATGGAAAAATTACTGGGGCAGAAGCTCGCGATTTGTTTTTGAGTTGGAGAATGCCAAGAGAGATATTAAAGCAGGTGTGGGACTTATCCGATCAAGATAACGATAGCATGCTTTCTCTGAGGGAGTTCTGCATTGCTCTATATTTAATGGAGAGGTACAGGGAAGGTCGACCTCTTCCAGCAGTGTTTCCTAGCAACGTCATGTCTCATTTTTCTAATAGTACTCCTATGACAAACTATAATAGTGCTGCTTGGGGACCTAGATCTGAATTTCAGCAACAGAAAGGGGTTTCTGCTTCTGATACTCACTCAGCCCGTGATACTGGAGTAACAGTTAGGCCTTTGGTGCCACCTTCTGTCCCCAGTGCAGATGAAGGGTTACAGATTAAGGAGCAGAAATCAAAAGTGCCAGTATTAGAGAAACACCTTCATTCTGTCTCTCCCGCCCTTTCTGTTGAAGAACTGGAGAAAGAACTTTTAGAGTCAAAACAGAAAATTGAATTTTACCGTGCTAAAATGCAGGAACTTGATGGAAATGAATTTTCATCTATTGACAAGCATGGTTTTATTCCTAAGCAGAAATTAACTTCAAATAGGATTCTTTACAAGAGTAGATGTGACAATCGCCTTAATGAGATCACAGAACGGGTGTCTGCAGATAAACGCGAGGCTGATTCCCTTGCAAAGAAATATGAAGATAAGTACAAACAAATTGGAGATGTAGCTTCCAAATTAACGATTGAAGAAGCAACCTTTCGGGATATACAGGAGAGGAAGATGGAGTATTACCAAGCAATTATAAAATTGGACCAAGATGGCAATGCTGATAATATTCAGGTTCGTGCTGATCGGATACAGTCAGATATTGATGAGTCAGTGAAAATTCTCAATGAGCGTTGCAAGACTTATGGATTACGTACAAAGCCAACAACTTTAACTGAACTTCCTTTTGGTTGGCAACCTGGTATCCAAGAAGGCTCTGCGGACTGGGATGAAGAATGGGATAAGTTTGATGATGAAGGATTTACTTTTGTGAAGGAGCTTACACTTGATGTGCAGAATGTGTTGGCTACTCCTAAACAGAAATCAAAGTCCATTCAAAATGAACAAAGTTCGATAGTTGATAGTCCAGGTATAGCAGCCTTATCTGACCCTGAAGCCAATGGGGAAAAGCCTCATATTACTGATGAAGCAGTTGTTGTTAATGGAACAACAAACAATACAAAAAGTGAACCTGAATCAGTAAAAAGTGTTCCTAGTAGCCCTGTTGGTAGTAGTGCTACTGAAAGTCCAAGGGAATTTTCAGATTCTATCTTTACGAAGACTTCTGGCTTTGATGTATCGCCATGGAATAAAGAAATCCGAAGTGATCATGGAGGAGCAGGATCTCCATTTTTTGGTGACAAGAGTTTTGATGAACCCACGTGGGGATCATTTGACACTAATGATGACATTGACTCTGTGTTGGGCTTTAACACAGTTAATGCGACCAAGGATTTGGGTCATGCTAGTAGTAGTAGAGAAAACTACTTTTTTGAGACTGGTGATTTTGGTCTAAATCCCATCAGAACAGATGTATCACAGTCCAATGCCTATGGTCAGAAGAAAGGCGGATTTAGTTTTGACGAGTCTGTTCCTAGTACACCGCTATTCAGTTCAGGCAATTCACCGCATGGTTCAGAACATAATTTTGACAGTTTTTCTAGTTTTGATTCTTTCCGAATGCAAGATAGTGGACTTTTCTCCCAGCGAGAAACACTAGCCCGATTCGATTCAATGCGAAGCAGTATAGACTTTGATCATGGCCACAGATTTCCACCGTTAGATGATTCAGACCCTTTTGGTTCTTCAGGGCCATTTAGAACATCGCAAGAGAATCAAACTCCCAGAAGAGGATCAGACAATTGGAGTGCCTTTTAG 3111 42.66 MATAHNQAPNTDLFDAYFQKADLDRDGRISAAEAVAFFQGSGLSKQVLAQIWASADPRQIGFLGRSEFYNALKLITVAQKKLELTPEIVKTALYGPAAAKIPPPQMNVTAMPPSQCNIAAASTASQIGTGTPTSSQNIEFRGPQVAPAVGINQQQFSFQANQLIRPPQSTSMTNSMPAQIIGTLGFPESGIVGRNSSPSTSISTDWVGGRVGGVQGIPSQVPDKGVASSTSQLGFGVSTSASTASLPPRPPSSGIRASGPPAKDSRIEGISGNGVTSNSFFGDDVFSATPPPPRQDSSSGSILSANIRRPPGIHSSLSPSVDSTGSSFPKQPDGGHLKQPQAVFRSNQQVLTQPSLSGHSPGLEISVSRQSPHPWPSMTQNDVQKYTKVFVEVDKDKDGKITGAEARDLFLSWRMPREILKQVWDLSDQDNDSMLSLREFCIALYLMERYREGRPLPAVFPSNVMSHFSNSTPMTNYNSAAWGPRSEFQQQKGVSASDTHSARDTGVTVRPLVPPSVPSADEGLQIKEQKSKVPVLEKHLHSVSPALSVEELEKELLESKQKIEFYRAKMQELDGNEFSSIDKHGFIPKQKLTSNRILYKSRCDNRLNEITERVSADKREADSLAKKYEDKYKQIGDVASKLTIEEATFRDIQERKMEYYQAIIKLDQDGNADNIQVRADRIQSDIDESVKILNERCKTYGLRTKPTTLTELPFGWQPGIQEGSADWDEEWDKFDDEGFTFVKELTLDVQNVLATPKQKSKSIQNEQSSIVDSPGIAALSDPEANGEKPHITDEAVVVNGTTNNTKSEPESVKSVPSSPVGSSATESPREFSDSIFTKTSGFDVSPWNKEIRSDHGGAGSPFFGDKSFDEPTWGSFDTNDDIDSVLGFNTVNATKDLGHASSSRENYFFETGDFGLNPIRTDVSQSNAYGQKKGGFSFDESVPSTPLFSSGNSPHGSEHNFDSFSSFDSFRMQDSGLFSQRETLARFDSMRSSIDFDHGHRFPPLDDSDPFGSSGPFRTSQENQTPRRGSDNWSAF 1036
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 5259295 5268506 + BLOR13519 Blo04g00607 59635

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo04g00607 1036 MobiDBLite consensus disorder prediction 238 338 - -
Blo04g00607 1036 ProSiteProfiles EF-hand calcium-binding domain profile. 381 416 IPR002048 GO:0005509
Blo04g00607 1036 Gene3D - 6 107 - -
Blo04g00607 1036 SMART eh_3 6 98 IPR000261 GO:0005515
Blo04g00607 1036 SMART eh_3 374 470 IPR000261 GO:0005515
Blo04g00607 1036 CDD EH 386 452 IPR000261 GO:0005515
Blo04g00607 1036 ProSiteProfiles EH domain profile. 10 100 IPR000261 GO:0005515
Blo04g00607 1036 MobiDBLite consensus disorder prediction 998 1036 - -
Blo04g00607 1036 MobiDBLite consensus disorder prediction 353 380 - -
Blo04g00607 1036 Pfam Cytoskeletal-regulatory complex EF hand 377 447 IPR000261 GO:0005515
Blo04g00607 1036 Coils Coil 607 627 - -
Blo04g00607 1036 CDD EH 14 80 IPR000261 GO:0005515
Blo04g00607 1036 MobiDBLite consensus disorder prediction 213 232 - -
Blo04g00607 1036 MobiDBLite consensus disorder prediction 496 520 - -
Blo04g00607 1036 ProSiteProfiles EF-hand calcium-binding domain profile. 9 44 IPR002048 GO:0005509
Blo04g00607 1036 PANTHER CALCIUM-BINDING EF HAND FAMILY PROTEIN 7 573 - -
Blo04g00607 1036 PANTHER CALCIUM-BINDING EF HAND FAMILY PROTEIN 597 1036 - -
Blo04g00607 1036 MobiDBLite consensus disorder prediction 270 284 - -
Blo04g00607 1036 Pfam EF hand 15 33 IPR002048 GO:0005509
Blo04g00607 1036 SUPERFAMILY EF-hand 11 89 IPR011992 -
Blo04g00607 1036 SUPERFAMILY EF-hand 372 468 IPR011992 -
Blo04g00607 1036 MobiDBLite consensus disorder prediction 1013 1036 - -
Blo04g00607 1036 MobiDBLite consensus disorder prediction 291 330 - -
Blo04g00607 1036 PANTHER EH DOMAIN 7 573 - -
Blo04g00607 1036 PANTHER EH DOMAIN 597 1036 - -
Blo04g00607 1036 Coils Coil 549 576 - -
Blo04g00607 1036 Gene3D - 366 470 - -
Blo04g00607 1036 ProSiteProfiles EH domain profile. 382 471 IPR000261 GO:0005515
Blo04g00607 1036 SMART efh_1 419 447 IPR002048 GO:0005509
Blo04g00607 1036 SMART efh_1 385 413 IPR002048 GO:0005509
Blo04g00607 1036 SMART efh_1 13 41 IPR002048 GO:0005509
Blo04g00607 1036 MobiDBLite consensus disorder prediction 801 832 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo04g00607 K12472 EPS15; epidermal growth factor receptor substrate 15 - jre:108997384 1094.72
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Blo04g00607 Blo13g00472 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo01g01675 Blo-Chr1:56472555 Blo04g00607 Blo-Chr4:5259295 0 dispersed
Blo04g00607 Blo-Chr4:5259295 Blo12g00817 Blo-Chr12:26533445 0 dispersed
Blo13g00472 Blo-Chr13:25547165 Blo04g00607 Blo-Chr4:5259295 0 transposed
Blo13g00471 Blo-Chr13:25522164 Blo04g00607 Blo-Chr4:5259295 1.68E-101 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g298 . . . . . . . . Cmo19g00819 Cmo11g01788 . . . . Sed05g2162 Cpe04g00633 Cpe15g00643 Bhi05g01580 Tan02g0572 Cmetu01g1669 Lac12g0474 . . . Cla02g00345 Cam02g0354 Cec02g0355 Cco02g0361 Clacu02g0346 Cmu02g0343 Cre02g0675 Cone12ag1298 Cone8ag1333 . . . Csa07g00188 . Cme01g01145 Blo04g00607 Blo13g00472 . Bda14g00649 Bpe15g00782 . Bma03g00639 Bma08g00716 . . . Cma11g01331 Cma19g00799 Car11g01415 Car19g00615 . . . . . . . . . . . . . . . . Lsi11g01287 . Chy01g00592 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004902 2 2 2 2 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 3 1 1 41
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo04g00607 Blo_Chr04 FPKM 1.674277 2.900394 10.594965 12.257977 2.962972 3.163436 2.336573 3.35038 3.12104 2.46225