Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo04g00610 ATGATTTTGTGTGTATCAAAACCTGTTCTCGCCGCTCTCTATTTGGCTCTCTTCATCGGTTGTGTGATTGCCAATGATTTTTCAATCGTGGGTTATTCCTCGGATGACTTAACCTCTACGGATAAGATCTTCGAGCTCTTTGAATCGTGGGTTTCAAGGCATGGGAAAGTCTACAGAAACGGGGAAGAGAAGCTGCATAGATTAGAAATATTCATGGACAACTTGAAGCACATCGATGAGAGGAACAAGCTGATTTGTAGCTATTGGCTCGGGTTGAATGAGTTTGCAGATTTGAGCCATGAAGAGTTTAAGAGCAAGTATTTAGGACTGAAAGCTGATCTTACTCAGAAAGATTACTCTCCAGAATTCAGTTACAGAGATGTGGTGGATTTGCCTAAGTCAGTGGACTGGAGGAAGAAGGGTGCTGTCACTTTTGTCAAGAACCAAGGCTCTTGTGGTATGCACAAGGTTGCAGGGAGTTGTTGGGCATTTTCAACAGTGGCAGCTGTTGAGGGAATAAACCAGATAGTGACAGGAAATCTAACCGCCTTGTCCGAGCAAGAGCTAGTAGATTGTGACAGGACATTCAATAATGGCTGTCATGGAGGTCTAATGGATTATGCTTTCCAATTCATAATCTCTAATGGTGGACTTCGTAAGGAGGAAGATTACCCATATCTCATGGACGAAGGAACTTGTGAAGAGCAGAAGATTTTCCTTTGTAAACTGACGTACCTGAATCTCCAGGAGGAATTGGATGTAGTAACCATCGACGGTTTCCAAGATGTTCCAGCAAACGATGAACAAAGCCTCTTAAAAGCATTAGCTCATCAGCCTCTTAGCGTAGCCATTGACGCATCCGGCAGAGATGTCCAATTTTATGGAGGGGGTATATTTACAGGACCTTGTGGAACAGATCTAGATCATGGAGTAGCAGCCGTCGGATATGGGTCGTCAAAAGGAACTGATTACATTATAGTGAAGAACTCATGGGGACGAAATTGGGGAGAAAGAGGATACATTAGAATGAAAAGAAACACAGGAAAAGCGGAAGGACTGTGTGGTATTAACAAAATGGTTTCCTATCCCACTAAAACAATATAA 1104 42.75 MILCVSKPVLAALYLALFIGCVIANDFSIVGYSSDDLTSTDKIFELFESWVSRHGKVYRNGEEKLHRLEIFMDNLKHIDERNKLICSYWLGLNEFADLSHEEFKSKYLGLKADLTQKDYSPEFSYRDVVDLPKSVDWRKKGAVTFVKNQGSCGMHKVAGSCWAFSTVAAVEGINQIVTGNLTALSEQELVDCDRTFNNGCHGGLMDYAFQFIISNGGLRKEEDYPYLMDEGTCEEQKIFLCKLTYLNLQEELDVVTIDGFQDVPANDEQSLLKALAHQPLSVAIDASGRDVQFYGGGIFTGPCGTDLDHGVAAVGYGSSKGTDYIIVKNSWGRNWGERGYIRMKRNTGKAEGLCGINKMVSYPTKTI 367
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 5283778 5285150 + BLOR13522 Blo04g00610 59638

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo04g00610 367 ProSitePatterns Eukaryotic thiol (cysteine) proteases histidine active site. 307 317 IPR025660 -
Blo04g00610 367 Gene3D Cysteine proteinases 26 366 - -
Blo04g00610 367 PANTHER CYSTEINE PROTEASE FAMILY C1-RELATED 23 365 - -
Blo04g00610 367 PANTHER CYSTEINE PROTEASE XCP1-LIKE 23 365 - -
Blo04g00610 367 Pfam Cathepsin propeptide inhibitor domain (I29) 47 103 IPR013201 -
Blo04g00610 367 PRINTS Papain cysteine protease (C1) family signature 309 319 IPR000668 GO:0006508|GO:0008234
Blo04g00610 367 PRINTS Papain cysteine protease (C1) family signature 324 330 IPR000668 GO:0006508|GO:0008234
Blo04g00610 367 PRINTS Papain cysteine protease (C1) family signature 155 170 IPR000668 GO:0006508|GO:0008234
Blo04g00610 367 SMART pept_c1 131 364 IPR000668 GO:0006508|GO:0008234
Blo04g00610 367 SUPERFAMILY Cysteine proteinases 41 364 IPR038765 -
Blo04g00610 367 Pfam Papain family cysteine protease 131 364 IPR000668 GO:0006508|GO:0008234
Blo04g00610 367 SMART Inhibitor_I29_2 47 103 IPR013201 -
Blo04g00610 367 ProSitePatterns Eukaryotic thiol (cysteine) proteases asparagine active site. 324 343 IPR025661 -
Blo04g00610 367 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 21 - -
Blo04g00610 367 CDD Peptidase_C1A 132 363 IPR039417 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo04g00610 K16290 XCP; xylem cysteine proteinase [EC:3.4.22.-] - pop:18098164 551.206
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Blo04g00610 Blo13g00466 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo04g00610 Blo-Chr4:5283778 Blo04g01066 Blo-Chr4:15310825 3.06E-124 dispersed
Blo13g00466 Blo-Chr13:25375146 Blo04g00610 Blo-Chr4:5283778 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g306 . . . . . . . . . Cmo11g01798 . . . . Sed05g2142 Cpe04g00640 . Bhi05g01552 Tan02g0549 Cmetu01g0266 Lac12g0456 Hepe02g0352 . . Cla02g00332 Cam02g0341 Cec02g0342 Cco02g0346 Clacu02g0332 Cmu02g0330 Cre02g0662 Cone12ag1288 Cone8ag1342 . Cone10ag1012 . Csa07g00207 . . Blo04g00610 Blo13g00466 . Bda14g00652 Bpe15g00777 . . . . . . Cma11g01323 . Car11g01424 . . . . . . . . . . . . . . . . . Lsi11g01302 . Chy01g00573 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002657 1 2 2 0 1 1 3 1 1 2 2 2 2 2 2 2 1 3 2 2 2 2 2 2 2 2 2 2 2 2 54
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo04g00610 Blo_Chr04 FPKM 6.542531 7.815343 3.530113 4.651186 9.066448 8.121426 8.762498 0.84411 0.863228 1.012975