Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo04g00611 ATGTCTCTCAGAATAAAGACGGTGGTGGATAAGTTCGTGCAGGAGCTCAAGGAAGCTTTAGATGCCGACATTCAAGATCGAATTATGAAGGAGAGGGAGATGCAGAGCTATATTGAAGAACGAGAACGCGAGGTCGCCGAGCGCGAAGCTGCTTGGAAGGCCGAACTCTCCCGTCGTGAGGCAGAGATAGCCAGACAAGAAGCAAGGCTAAAGATGGAGAAAGAAAACCTGGAAAAAGAAAAGAGTGTGCTAATGGGAACTGCTTCAAACCAAGACAATCAAGATGGAGCTCTGGAGATCACCGTGAGTGGTGAGAAATATCGTTGCCTGAGGGAAAGGGCAGGGTGTGATCCAACAGTTCCCGATGCTCCTGCCAGGGCGGAAAAATTTGCTCAAAGGTATGCCGAGATCCTTGATGATTTTAAGAAAGACCCTGAGAGTCATGGAGGCCCCCCTGATTGCATTCTCCTCTGTAGAATTCGGGAACAAATTCTTAGAGAATTGGGATTCAAAGATATATTCAAGAAAGTTAAGGATGAAGAGAATGCAAAGGCTATATCTTTATTTGCAGATGTAGTTCAGCTCAACGATGCTATTGAAGATGGAAACAAACGTTTAGAGAATCTTGTTAGAGGAATATTTGCAGGCAACATATTTGATCTCGGGTCTGCTCAGCTAGCTGAGGTTTGCTCGAGAGATGGCATGTCCTTCTTGGCTAGCTGCCAAAACCTTGTTCCTCGGCCTTGGGTTGTTGATGATTTGGACAGTTTTAAATTGAATTGGAGCAAAAAATCGTGGAAAAAGGCAAGCAAAACTCTGTATGTTAACTTTTCTAGTCTATGCAAACTGTTATATTTTGTAACTGCCTCTCGCATAAAAACAACCTCCTATATTATCTGCTTGCAGGCTGTAATTTTTGTTGGTAACTCTGGTGCGGATATAATTTTAGGCATCTTGCCGTTTGTGAGAGAGTTACTCCGACGAGGGACACAGGTCATCTTAGCCGCAAAGGACTTGCCATCAATCAATGATGTCACTTACATTGAACTGATTGAAATTATTTCAAAGCTGAAGGACGAAAAAGGACAGCTCATAGGTGTTGATACTTCCGGTCTTTTAATTTCCAATTCTGGCAATGATTTACCTGTTATAGATCTGTCGAGTGTGTCACAGGAGCTTGCCTATTTAGCAACTGATGCTGATCTTGTTATTCTGGAAGGAATGGGTCGTGGGATAGAGACAAATCTTTATGCTCGATTTAAGTGTGATTCACTGAAGATTGGCATGGTGAAACATCCTGAGGTTGCACAATTTCTCGGAGGAAGGCTTTATGATTGTGTCTTAAAATACAACGAAGTTTTAAGTTAG 1368 42.69 MSLRIKTVVDKFVQELKEALDADIQDRIMKEREMQSYIEEREREVAEREAAWKAELSRREAEIARQEARLKMEKENLEKEKSVLMGTASNQDNQDGALEITVSGEKYRCLRERAGCDPTVPDAPARAEKFAQRYAEILDDFKKDPESHGGPPDCILLCRIREQILRELGFKDIFKKVKDEENAKAISLFADVVQLNDAIEDGNKRLENLVRGIFAGNIFDLGSAQLAEVCSRDGMSFLASCQNLVPRPWVVDDLDSFKLNWSKKSWKKASKTLYVNFSSLCKLLYFVTASRIKTTSYIICLQAVIFVGNSGADIILGILPFVRELLRRGTQVILAAKDLPSINDVTYIELIEIISKLKDEKGQLIGVDTSGLLISNSGNDLPVIDLSSVSQELAYLATDADLVILEGMGRGIETNLYARFKCDSLKIGMVKHPEVAQFLGGRLYDCVLKYNEVLS 455
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 5285510 5291975 - BLOR13523 Blo04g00611 59639

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo04g00611 455 Pfam Damage-control phosphatase ARMT1-like domain 303 444 IPR002791 -
Blo04g00611 455 Pfam Damage-control phosphatase ARMT1-like domain 118 268 IPR002791 -
Blo04g00611 455 Gene3D Uncharacterised protein PF01937, DUF89, domain 3 293 454 - -
Blo04g00611 455 Gene3D - 87 171 IPR035073 -
Blo04g00611 455 PANTHER PANTOTHENATE KINASE 305 453 IPR004567 GO:0004594|GO:0005524|GO:0015937
Blo04g00611 455 PANTHER PANTOTHENATE KINASE 109 272 IPR004567 GO:0004594|GO:0005524|GO:0015937
Blo04g00611 455 Coils Coil 56 83 - -
Blo04g00611 455 SUPERFAMILY AF1104-like 125 451 IPR036075 -
Blo04g00611 455 PANTHER - 305 453 - -
Blo04g00611 455 PANTHER - 109 272 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo04g00611 K24854 K24854; damage-control phosphatase, subfamily II, stand-alone protein [EC:3.1.3.-] - twl:119990615 519.235
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Blo04g00611 Blo13g00465 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo04g00734 Blo-Chr4:6833180 Blo04g00611 Blo-Chr4:5285510 1.45E-50 transposed
Blo13g00465 Blo-Chr13:25368800 Blo04g00611 Blo-Chr4:5285510 0 transposed
Blo13g00464 Blo-Chr13:25302024 Blo04g00611 Blo-Chr4:5285510 1.45E-57 wgd
Blo15g00414 Blo-Chr15:5903473 Blo04g00611 Blo-Chr4:5285510 1.55E-49 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g307 . . . . . Bpe12g00157 . . Cmo19g00830 . . . . . . . Cpe15g00651 Bhi05g01551 Tan02g0548 . . Hepe02g0351 . . . . . . . . . . . Cone3ag1254 Cone10ag1207 . Csa07g00208 . . Blo04g00611 Blo13g00465 . . Bpe15g00776 . Bma03g00643 Bma08g00710 . . . . . . Car19g00627 . . . . . . . . . . . . . . . . Lsi11g01303 . Chy01g00572 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007984 0 2 2 2 2 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 2 2 1 36
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo04g00611 Blo_Chr04 FPKM 30.705362 31.405495 49.888794 47.164181 20.882738 21.298462 21.616095 28.576645 28.215853 28.25235