Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo04g00616 ATGAGAGAGAAATTGAGACAGAGCAAAGAGTGTCATGGCATTGTGAATTACAGAGAAGTGAGTGTGAGGGAGAGGCTCTGGATGAAGAGGGGGGCAGTGAAGTGGATTGGAGTTGCAGCTCACGGTCCAGCTGCTGCAAATCTATTGTCGATGGCTGGAGAGGTTGCAGGGATGTTGGAAGCTGCTATCGGGTGTTCTTTGATATTTAATTTTAAAAAGACACATGGTCGCGGAAGTGTTGGTGTATCCGCCAAATGCTATGTAAACGTGACATATGAACCGAATTTCGCGATCCGGTTCTCAGTTCTCGGTACTGCAGAACCGGTACCGACCGAAGAACCGAGAATCCGTCCCGCTGCTTCTCTCTCAAGTCTCACTCACTCTCAGTCTCTCGACTATCAACACTCTGCACCTGCACTCCCGCCTCCCGAGAAGCCAATATTTTACTCCAGAATCTCCTCTGACCCCTCGAACCTCCTCCGTTCTTGGAAACTCTCCACCGACTGCTGCAAACCATGGGATGGAATCGGCTGCTACTCCTCTGGCAGAGTCACCAACCTCTCCCGTCCGGGCTTCTTCTCCGACGCTGACTTCATCGTCGATACTGCTATGTCCGGTACTCTCTCCCCCTTCCTCGGAAACTTGTCGTTTCTTCCGTTTTTGGACCTGGGAAACCTCAAACTTTCTCACCTCACTCACCTTTTTCTTGATTCAAATAACCTCACTGGTTTGATTCCGTTCACTTTTAAATGCCTTTTTCAGTTGCAGAGGCTTTATCTAAGTAATAATGATCTCTCTGGCGATCTTCTTAGCTCGATTTTCCGATCTTTCAGATCAATTAATATGGACACCGGAGGCAATTCTTTACCTTCGGGTTCTGATGGAGTTAAAAGAAAGGTGTCTTACTTCTATGACCCCGAGGTTGGAAATTACTACTATGGCCAGGGTCATCCTATGAAGCCTCATCGCATCAGAATGACCCATGCTCTTCTCGCCCACTATGGATTGCTTCAGCATATGCAGGTTCTCAAGCCCTTTCCTGCTAGGGATAGGGACCTTTGCCGCTTCCATGCTGATGATTACGTATCTTTCCTAAGAACCATTACACCAGAAACGCAACAAGATCAGCTTAGGCAGCTCAAACGCTTCAATGTTGGTGAGGATTGCCCGGTTTTTGATGGACTGTACAATTTTTGTCAGACTTCTGCTGGTGGCTCAGTTGGTGGTGCTGTTAAGTTGAACCACAATCTATGTGATATCGCTGTGAATTGGGCCGGTGGGCTACATCATGCTAAAAAGTGTGAGGCTTCAGGTTTTTGCTATGTCAACGATATTGTCCTAGCTATCTTAGAGCTTCTTAAACAGCACGAGCGTGTTTTATATGTTGACATCGATATTCACCACGGAGATGGTGTAGAAGAGGCTTTTTATACAACTGATCGGGTTATGACTGTTTCATTCCACAAATTTGGAGACTATTTCCCCGGTACGGGTGATATACGTGATATTGGTTATTTAAAAGGAAAGTATTATTCTCTGAATGTTCCACTAGACGATGGTATAGATGATGAGAGCTATCATTTTTTGTTCAAACCTATAATTGGAAAGGTTATGGAAGTTTATAGGCCTGGTGCTGTGGTCCTCCAATGTGGCGCTGACTCTTTATCTGGAGACAGGCTAGGATGCTTCAATCTTTCCATTAAAGGTCATGCAGAGTGTGTCAGATACATGAGATCGTTTAATGTTCCTCTATTGCTTCTTGGTGGTGGTGGCTATACCATTCGTAATGTTGCTCGATGCTGGTGCTATGAGACAGGAGTTGCTCTTGGAATAGAAGTTGATGACAAAATGCCACAGCATGAATATTATGAGTATTTTGGCCCAGATTACACTCTGCATGTCGCCCCTAGTAATATGGAAAATAAAAATTCTCCCTCGTTATTGGAGGAAATACGAGCAAAACTTCTTGAGAATCTCTCAAAGCTTCAACATGCACCTAGTGTTCAGTTTCAGGAAAGGCCCCCTGATACTGAACTCCCGGAGGCTGATGAAGATCATAATGATGCGGATGAGAGATGGGATCCGGACCCAGATTCAGATATGGAAGTTGACGAGGATAGAAAGCCTTCACTAAGCAGAGTAAAGAGGGAAATGGTGGAGACTGAGCTCAAAGATCCGATGTGGCACATTCTAGCAACTTTAATTGACTTTAATTTTTTCTTTTTGTTTGATAGTGAGAAAAGTCAATCTGAAACAGTGAGCGATGATGACAACAGTCAGCCACATCCTTACGCATCTGCTGTTAGTGACAGCATCGAATCTGACTCTGAGCCATCCAGGGATTTCAAGACTACTGAAAATTCCTCCGAGGATGATGTTGATGGAAGACTAGATGAAATAGAACTGCCTGTAAATACCAGTCATGGATCCAAAGACAATAATGCAGGTGGTGAGACTCCTTTAAAGCGGAAGAGGCGTGTCAAAATTAAAGCTCGTAAAATAAAGAAGCAACAAAATAGTGGCTTGCCCCGGAGGTCACCCCGTGCACTTAGTAAAGAGCATGAGATAAAAGGTGCAATCGAAATTGGAGTTTCTAAGTCCAAAATGTTAAAAGAAAGCCGTGAATCCGTTAAGAAATTCAAAACGTTGACTCTTCCCAATGCAAAGCGTAGGAGGTTGCCGTGGACAACTGAAGAGGAGGAAATGCTAAGGGAAGGAGTACGAAAATTTTCAACCTCAGTTAACAAAAATCTTCCTTGGAGGAAAATTTTGGAATTTGGCCACCACATATTTGGCAGGATGCGTGGTCCTGTTGATCTTAAGGATAAATGGAGGAAAATGCAAGCCAGATAG 2853 44.37 MREKLRQSKECHGIVNYREVSVRERLWMKRGAVKWIGVAAHGPAAANLLSMAGEVAGMLEAAIGCSLIFNFKKTHGRGSVGVSAKCYVNVTYEPNFAIRFSVLGTAEPVPTEEPRIRPAASLSSLTHSQSLDYQHSAPALPPPEKPIFYSRISSDPSNLLRSWKLSTDCCKPWDGIGCYSSGRVTNLSRPGFFSDADFIVDTAMSGTLSPFLGNLSFLPFLDLGNLKLSHLTHLFLDSNNLTGLIPFTFKCLFQLQRLYLSNNDLSGDLLSSIFRSFRSINMDTGGNSLPSGSDGVKRKVSYFYDPEVGNYYYGQGHPMKPHRIRMTHALLAHYGLLQHMQVLKPFPARDRDLCRFHADDYVSFLRTITPETQQDQLRQLKRFNVGEDCPVFDGLYNFCQTSAGGSVGGAVKLNHNLCDIAVNWAGGLHHAKKCEASGFCYVNDIVLAILELLKQHERVLYVDIDIHHGDGVEEAFYTTDRVMTVSFHKFGDYFPGTGDIRDIGYLKGKYYSLNVPLDDGIDDESYHFLFKPIIGKVMEVYRPGAVVLQCGADSLSGDRLGCFNLSIKGHAECVRYMRSFNVPLLLLGGGGYTIRNVARCWCYETGVALGIEVDDKMPQHEYYEYFGPDYTLHVAPSNMENKNSPSLLEEIRAKLLENLSKLQHAPSVQFQERPPDTELPEADEDHNDADERWDPDPDSDMEVDEDRKPSLSRVKREMVETELKDPMWHILATLIDFNFFFLFDSEKSQSETVSDDDNSQPHPYASAVSDSIESDSEPSRDFKTTENSSEDDVDGRLDEIELPVNTSHGSKDNNAGGETPLKRKRRVKIKARKIKKQQNSGLPRRSPRALSKEHEIKGAIEIGVSKSKMLKESRESVKKFKTLTLPNAKRRRLPWTTEEEEMLREGVRKFSTSVNKNLPWRKILEFGHHIFGRMRGPVDLKDKWRKMQAR 950
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 5370670 5389140 + BLOR13528 Blo04g00616 59644

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo04g00616 950 PANTHER HISTONE DEACETYLASE 284 726 - -
Blo04g00616 950 PANTHER HISTONE DEACETYLASE 19 284 726 - -
Blo04g00616 950 SUPERFAMILY Homeodomain-like 890 947 IPR009057 -
Blo04g00616 950 Gene3D Ribonuclease Inhibitor 147 299 IPR032675 -
Blo04g00616 950 MobiDBLite consensus disorder prediction 750 853 - -
Blo04g00616 950 Gene3D - 886 949 - -
Blo04g00616 950 SMART sant 891 950 IPR001005 -
Blo04g00616 950 PRINTS Histone deacetylase superfamily signature 426 449 IPR000286 -
Blo04g00616 950 PRINTS Histone deacetylase superfamily signature 543 553 IPR000286 -
Blo04g00616 950 PRINTS Histone deacetylase superfamily signature 458 473 IPR000286 -
Blo04g00616 950 MobiDBLite consensus disorder prediction 774 791 - -
Blo04g00616 950 MobiDBLite consensus disorder prediction 665 711 - -
Blo04g00616 950 MobiDBLite consensus disorder prediction 750 773 - -
Blo04g00616 950 MobiDBLite consensus disorder prediction 823 839 - -
Blo04g00616 950 Pfam Histone deacetylase domain 317 605 IPR023801 -
Blo04g00616 950 SUPERFAMILY L domain-like 152 274 - -
Blo04g00616 950 Pfam Leucine rich repeat N-terminal domain 149 178 IPR013210 -
Blo04g00616 950 SMART LRR_typ_2 252 276 IPR003591 -
Blo04g00616 950 SMART LRR_typ_2 228 251 IPR003591 -
Blo04g00616 950 PRINTS Histone deacetylase signature 504 517 IPR003084 GO:0004407|GO:0016575
Blo04g00616 950 PRINTS Histone deacetylase signature 404 424 IPR003084 GO:0004407|GO:0016575
Blo04g00616 950 PRINTS Histone deacetylase signature 319 336 IPR003084 GO:0004407|GO:0016575
Blo04g00616 950 PRINTS Histone deacetylase signature 445 461 IPR003084 GO:0004407|GO:0016575
Blo04g00616 950 PRINTS Histone deacetylase signature 352 370 IPR003084 GO:0004407|GO:0016575
Blo04g00616 950 PRINTS Histone deacetylase signature 383 400 IPR003084 GO:0004407|GO:0016575
Blo04g00616 950 PRINTS Histone deacetylase signature 521 539 IPR003084 GO:0004407|GO:0016575
Blo04g00616 950 SUPERFAMILY Arginase/deacetylase 298 662 IPR023696 -
Blo04g00616 950 MobiDBLite consensus disorder prediction 681 701 - -
Blo04g00616 950 Gene3D Histone deacetylase domain 300 669 IPR037138 -
Blo04g00616 950 CDD SANT_TRF 894 947 - -
Blo04g00616 950 ProSiteProfiles Myb-like domain profile. 887 948 IPR001005 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo04g00616 K06067 HDAC1_2; histone deacetylase 1/2 [EC:3.5.1.98] - vvi:100241833 878.626
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Blo04g00616 Blo13g00456 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo04g00616 Blo-Chr4:5370670 Blo13g00456 Blo-Chr13:24966786 0 dispersed
Blo04g00616 Blo-Chr4:5370670 Blo05g00821 Blo-Chr5:29920003 1.71E-63 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g328 . . . . . Bpe12g00163 . . . Cmo11g01384 Cma02g00311 Cma20g00695 Car02g00192 . . Cpe04g00295 . Bhi05g01087 . . . . . . Cla02g00624 Cam02g0658 Cec02g0661 Cco02g0685 Clacu02g0666 . Cre02g0979 . . . . . Csa07g00228 . Cme01g00073 Blo04g00616 Blo13g00456 . . Bpe15g00768 . Bma03g00653 Bma08g00825 . Cmo02g00305 Cmo20g00687 . . . . . Cpe05g01328 . . . . . . . Cla02g01045 Cam02g1113 Cec02g1118 Cco02g1152 Clacu02g1099 Cmu02g1059 Cre02g1367 Lsi11g01321 . Chy01g00080 Cme11g01011
Vvi12g751 . . . . Bpe12g00165 Bpe15g00766 Bma03g00655 Bma08g00699 . Cmo19g00848 . . . . Sed02g0312 Cpe15g00668 Cpe04g00663 Bhi05g01516 Tan02g0520 Cmetu04g1696 . . . . Cla02g00314 Cam02g0321 Cec02g0322 Cco02g0324 Clacu02g0313 Cmu02g0312 Cre02g0644 . . . Cone12ag1279 . Csa07g00230 . Cme01g00579 Blo04g00616 . Bda14g00658 . . . . . . . . . Cma19g00830 Car11g01448 Car19g00645 . . . . . . . . . . . . . . . . Lsi11g01324 . Chy01g00550 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011386 0 1 2 1 0 1 1 1 1 1 2 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 31
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo04g00616 Blo_Chr04 FPKM 229.648056 251.382706 242.065201 237.032837 276.199554 348.045654 274.672211 383.492218 362.628174 344.23877