Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo04g00617 ATGGGGGAAGAAGGCGACCCCAGCTCGGAGAAGGCCCAATGCCGAGGGATCAATGGAGGTGCAGTAACAGCCATTGGTTTGGCAGCTGTGATTCTCAAGATGAGGATTGGTATGGCCCACTCACCGGTCCTCGTTTGTACCCATTTCCTCTTGCTTATATCAAATCTACCTCCTGCCGCGGTAGATGAAGTGCACAACACTATAGGGTTTGTCCTCATGGCATCGAAACCTAGTCCAACGGGTAAGCTGAATACAATTTTTCTTCCATTTCATGACCCACCGATTTTTCTTCGGTGGTTATTTGGAAACGTTATGCCGCTTCCTGAATGGCTTTCCTGTCATGGTCTTTATGGGTTAAATGATATGTCAAGGCTGTATTCTCTATTTTCAGATGAAAAAGCTGGTTTGAGCGAGATAGATATCTATACATCTGAAACATCCTCTGTGGAGCCACCGCCACCCTCTTCCGCAGAATCATCCCCTCGTGCTGGCAATGATCGTAGCATTAAGGACGCACGCGAAACCTCCTCTAGGCAGCCATCGGAAACCTCTTCCCAGGGTGCTGGGTTTCCTCCTTTTGATTTCTCGGTCTTAAATGACCTGCTTAATGATCCTAGCATGAAGGAAGCATTTGTAACATCCTCTCTGCAGCCACCCGCAGCTTCTTCCCAGGGTGCTGGGTATCCCACAAACCCTTTCGATTTCTCAGCCATAAGTGGCCTGCTTAATGATCCTAGCATGAAGGAAGCATTTGAAACATCCTCTTTGCAGCCACCCACAGCTTCTTCTCAGGGTGCCGGGTTTCCTGCGAACCCTTTCGATTTCTCAGCCATGAGTGGCTTGCTTAATGATCCGAGCATTAAGGACTTAGCAGAACAAATAGCAAAAGATCCTGCATTCAACCAGATGGCTGAGCAGCTTCAGAAAACTTTTCAAGGTGGATCAGTTGAACAAGGAATCCCCCAGTTTGATTCACAACAATATTATTCCACAATGCAACAGGTTATGCAGAATCCTCAATTTATGTCTATGGCTGAGCAACTTGGTAGTGCATTAATGCAGGACCCATCTATGTCTAGAATGCTAGAGACTTTTGCAAACCCATCAAGTAAACAGCTTGAAGAACGAATGGCACGACTTAGAGAAGATCCTTCCTTGAAGCCTATTTTGGAGGAGATAGAGAATGGTGGACCAGCTGCTATGATGAAGTACTGGAATGATAAAGACGTCTTGCAGAAATTAGGTGAAGCAATGGGTCTTGCAGCTACAGGAGAGGCAGTAGCTGCTGACAACTCTGCAGTAGATGATGCTGAAGAAGTGATAAATGAGGACGAGTCAATAGTTCATAATACTGCTAGTGTTGGCGATGTTGAGGGATTGAAAGCTGCACTGGCTTCTGGTGCCTACAAGGACGAAGAAGATTCAGAAGGAAGGACAGCATTGCATTTTGCATGTGGTTATGGCGAGGTGAAGTGTGCTCAGATTCTCCTTGAAGCTGGAGCTGCTGTTGATGCTTTGGACAAGAACAAGAACACAGCACTTCATTATGCTGCTGGTTATGGCAGAAAAGAGTGTGTGGCTCTTCTGCTGGAAAACGGAGCTGCTGTAATTCTTTTATGTAAGACACCTGCTCAGTTCTTAATCAACGTTCTTTGCGTTCTCCTGAGGAACGAAATTTTAGAGGATGCTGATGGATAA 1698 46.05 MGEEGDPSSEKAQCRGINGGAVTAIGLAAVILKMRIGMAHSPVLVCTHFLLLISNLPPAAVDEVHNTIGFVLMASKPSPTGKLNTIFLPFHDPPIFLRWLFGNVMPLPEWLSCHGLYGLNDMSRLYSLFSDEKAGLSEIDIYTSETSSVEPPPPSSAESSPRAGNDRSIKDARETSSRQPSETSSQGAGFPPFDFSVLNDLLNDPSMKEAFVTSSLQPPAASSQGAGYPTNPFDFSAISGLLNDPSMKEAFETSSLQPPTASSQGAGFPANPFDFSAMSGLLNDPSIKDLAEQIAKDPAFNQMAEQLQKTFQGGSVEQGIPQFDSQQYYSTMQQVMQNPQFMSMAEQLGSALMQDPSMSRMLETFANPSSKQLEERMARLREDPSLKPILEEIENGGPAAMMKYWNDKDVLQKLGEAMGLAATGEAVAADNSAVDDAEEVINEDESIVHNTASVGDVEGLKAALASGAYKDEEDSEGRTALHFACGYGEVKCAQILLEAGAAVDALDKNKNTALHYAAGYGRKECVALLLENGAAVILLCKTPAQFLINVLCVLLRNEILEDADG 565
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 5380017 5385500 - BLOR13529 Blo04g00617 59645

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo04g00617 565 ProSiteProfiles Ankyrin repeat profile. 509 536 IPR002110 GO:0005515
Blo04g00617 565 MobiDBLite consensus disorder prediction 143 163 - -
Blo04g00617 565 Gene3D - 446 554 IPR036770 -
Blo04g00617 565 PANTHER ANKYRIN REPEAT FAMILY PROTEIN 262 539 - -
Blo04g00617 565 Pfam Ankyrin repeats (3 copies) 452 534 IPR002110 GO:0005515
Blo04g00617 565 ProSiteProfiles Ankyrin repeat profile. 476 508 IPR002110 GO:0005515
Blo04g00617 565 PANTHER - 262 539 - -
Blo04g00617 565 MobiDBLite consensus disorder prediction 143 191 - -
Blo04g00617 565 ProSiteProfiles Ankyrin repeat region circular profile. 509 536 - -
Blo04g00617 565 PANTHER ANKYRIN REPEAT FAMILY PROTEIN 221 258 - -
Blo04g00617 565 PANTHER - 221 258 - -
Blo04g00617 565 Pfam STI1 domain 376 419 IPR041243 -
Blo04g00617 565 SUPERFAMILY Ankyrin repeat 436 536 IPR036770 -
Blo04g00617 565 SMART ANK_2a 509 539 IPR002110 GO:0005515
Blo04g00617 565 SMART ANK_2a 476 505 IPR002110 GO:0005515
Blo04g00617 565 SMART ANK_2a 443 472 IPR002110 GO:0005515
Blo04g00617 565 ProSiteProfiles Ankyrin repeat region circular profile. 476 508 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo04g00617 - - - zju:107427115 468.388
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Blo04g00617 Blo13g00584 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo04g00617 Blo-Chr4:5380017 Blo04g00152 Blo-Chr4:1249119 2.05E-10 dispersed
Blo13g00455 Blo-Chr13:24963092 Blo04g00617 Blo-Chr4:5380017 2.63E-11 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g332 . . . . . Bpe12g00164 . . . . Cma02g00314 . Car02g00195 Car20g00595 Sed01g0615 . . Bhi05g01518 Tan02g0522 Cmetu05g1570 Lac12g0422 Hepe02g0332 . . Cla02g00315 Cam02g0322 Cec02g0323 Cco02g0325 Clacu02g0314 Cmu02g0313 Cre02g0645 Cone12ag1280 Cone8ag1351 Cone3ag1265 . . Csa07g00229 . . Blo04g00617 Blo13g00584 . . Bpe15g00922 . Bma03g00654 Bma08g00700 . Cmo02g00308 . . . . . . Cpe05g01326 . . . . . . . Cla02g01042 . . . . . . Lsi11g01322 . Chy01g00551 Cme11g01009
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002762 0 3 2 2 2 2 2 1 1 1 2 1 1 2 2 1 1 3 2 1 2 2 2 2 2 2 2 7 3 1 57
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo04g00617 Blo_Chr04 FPKM 83.17157 85.21933 68.727516 65.7882 100.654144 121.635231 92.818352 83.72068 81.217255 74.928772