Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo04g00653 ATGGAACGTGGATCTAGTAGCAGCGGTAGCTCTTTTGTTGTAGGGTTTGGAGAAAACAGTTGCAGCACTGGGAGTGGACTTTGTTCGATGGGGACAGGGATGATGGCTCCGCCGATGAATAATTGCGGTGCAGAAATGGATCATAAGCTGTTTTTTCCTCTAGTCTGGAACAACTCCTCCACTAATAGCTCTAATAGCGGCCAAAGGGTGTCTGCTTTACTTCCGCAACACCATAGTCAAGGAGTTTCTTCTCTTATGGAGGTTAACAACGCTGAGTGTCAAAACAACAGCTCCAATGGCTGTTATTTGAGAGCTAAGATTATGGGTCACCCTCTTTTTTCTAGACTCTTGAACTCATATGTCAACTGTCAGAAGGTTGGGGCACCGCTTGAAGTGATGGCTAGGTTAGAGGAGGTCTGTGCTTCGTACAATGCAGCAACGGCTGGGGGCGATGGAAGGTCGTCGGAGACTGCAGGCTGTGTTGGAGAAGACCCTGCATTGGACCAGTTTATGGAGGCTTACTGTGAGATGCTGGCTAAGTATGAGCAAGAGCTCACAAAACCCTTCAAAGAAGCCATGCTTTTCTTCTCGAGAATTGAGTCTCAACTGAAAGCGTTGGAAGTTTCTTCTGTTTCTTCCGCCTGTAGGTTTGGAAGTTCCAAGGAAGAAGGGGTAGATGTCGTAGACAATTACATAGATCCTGAAGCGGAGGATAAAGATCTCAAACTTCAACTTTTACGCAAGTACAGTGGGTATCTCGGCAGTCTAAAGCAAGAATTTCTGAAGAAGAAGAAGAACGGCAAGTTGCCAAAGGAAGCCCGGCACAAACTGCTGGACTGGTGGACCAAACACTACAAATGGCCTTACCCCTCCGAGGGGCAGAAGGTGGCATTGGCGGATTCAACTGGTCTAGATCTGAAGCAGATCAACAACTGGTTTATAAACCAAAGGAAGCGCCATTGGAGGCCGTCTGATGATATGCAATTTGTGGTGATGGACGTCGATCATCCCGCCCATTACTATATGGATACTGGTGATTGTGTGTTAATGCGACCATCAGATTCTGATAAACCACCGTACGTAGCTCGCGTGGAGAAGATCGAAGCCGATCACCGCAACAACATTAAGGTTCGGGTAAGATGGTATTATCGACCAGAGGAGTCCATAGGAGGACGGAGACAGTTCCACGGGGCAAAAGAGTTGTTTCTCTCCGATCACTATGATGTACAGAGTGCCCACACCATAGAGGGTAAATGCACGGTACACTCTTTCAAGAACTACACCAAGCTTGAAAATGTCGGCGCTGAAGATTACTTTTGTCGATTTGAGTATAAAGCTGCAACTGGCGGTTTCACGCCGGACCGTGTGGCTGTGTATTGTAAGTGTGAGATGCCATACAATCCGGACGACCTGATGGTGCAGTGTGAGGGATGCAAAGACTGGTTTCATCCATCTTGCATGGGCATGTCCATTGAAGACGCAAAGAAGTTGGATCACTTTCTATGCTCCGATTGTTCTTCCGAAGATGATGCAAAAAGATCCTTGAGTGCATTTCCTGTGACGCAATCTCCGGAGGATAAGGTGAGTATGCATTTTCTGTCTGTCAATTCTCTTGCAACAAAGTGA 1626 47.05 MERGSSSSGSSFVVGFGENSCSTGSGLCSMGTGMMAPPMNNCGAEMDHKLFFPLVWNNSSTNSSNSGQRVSALLPQHHSQGVSSLMEVNNAECQNNSSNGCYLRAKIMGHPLFSRLLNSYVNCQKVGAPLEVMARLEEVCASYNAATAGGDGRSSETAGCVGEDPALDQFMEAYCEMLAKYEQELTKPFKEAMLFFSRIESQLKALEVSSVSSACRFGSSKEEGVDVVDNYIDPEAEDKDLKLQLLRKYSGYLGSLKQEFLKKKKNGKLPKEARHKLLDWWTKHYKWPYPSEGQKVALADSTGLDLKQINNWFINQRKRHWRPSDDMQFVVMDVDHPAHYYMDTGDCVLMRPSDSDKPPYVARVEKIEADHRNNIKVRVRWYYRPEESIGGRRQFHGAKELFLSDHYDVQSAHTIEGKCTVHSFKNYTKLENVGAEDYFCRFEYKAATGGFTPDRVAVYCKCEMPYNPDDLMVQCEGCKDWFHPSCMGMSIEDAKKLDHFLCSDCSSEDDAKRSLSAFPVTQSPEDKVSMHFLSVNSLATK 541
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 5718728 5723750 + BLOR13565 Blo04g00653 59681
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Blo04g00653 541 SMART ELK_2 240 261 IPR005539 GO:0003677
Blo04g00653 541 CDD BAH_BAHCC1 345 475 - -
Blo04g00653 541 Gene3D - 266 327 - -
Blo04g00653 541 Pfam KNOX2 domain 160 206 IPR005541 GO:0003677|GO:0005634
Blo04g00653 541 Pfam PHD-finger 459 507 IPR019787 -
Blo04g00653 541 ProSitePatterns Zinc finger PHD-type signature. 460 505 IPR019786 -
Blo04g00653 541 ProSiteProfiles BAH domain profile. 340 455 IPR001025 GO:0003682
Blo04g00653 541 Pfam BAH domain 344 454 IPR001025 GO:0003682
Blo04g00653 541 PANTHER HOMEOBOX PROTEIN SBH1-LIKE ISOFORM X1 3 350 - -
Blo04g00653 541 ProSiteProfiles ELK domain profile. 240 260 IPR005539 GO:0003677
Blo04g00653 541 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 453 518 IPR013083 -
Blo04g00653 541 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 3 350 - -
Blo04g00653 541 SMART BAH_4 338 455 IPR001025 GO:0003682
Blo04g00653 541 SMART KNOX2_2 157 208 IPR005541 GO:0003677|GO:0005634
Blo04g00653 541 ProSitePatterns 'Homeobox' domain signature. 298 321 IPR017970 GO:0000981|GO:0006355
Blo04g00653 541 SUPERFAMILY Homeodomain-like 262 335 IPR009057 -
Blo04g00653 541 ProSiteProfiles Zinc finger PHD-type profile. 457 508 IPR019787 -
Blo04g00653 541 SMART KNOX1_2 101 145 IPR005540 GO:0003677|GO:0005634
Blo04g00653 541 SMART PHD_3 459 506 IPR001965 -
Blo04g00653 541 Gene3D - 338 452 IPR043151 -
Blo04g00653 541 ProSiteProfiles 'Homeobox' domain profile. 260 323 IPR001356 GO:0003677
Blo04g00653 541 SUPERFAMILY FYVE/PHD zinc finger 450 508 IPR011011 -
Blo04g00653 541 Pfam KNOX1 domain 103 141 IPR005540 GO:0003677|GO:0005634
Blo04g00653 541 CDD homeodomain 272 324 IPR001356 GO:0003677
Blo04g00653 541 Pfam Homeobox KN domain 280 319 IPR008422 GO:0003677|GO:0006355
Blo04g00653 541 Pfam ELK domain 240 261 IPR005539 GO:0003677
Blo04g00653 541 SMART HOX_1 262 327 IPR001356 GO:0003677
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo04g00653 Blo-Chr4:5718728 Blo13g00994 Blo-Chr13:32344218 2.29E-113 dispersed
Blo19g00301 Blo-Chr19:19356768 Blo04g00653 Blo-Chr4:5718728 4.33E-17 dispersed
Blo04g00653 Blo-Chr4:5718728 Blo14g00016 Blo-Chr14:112890 6.03E-116 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
12283 PF01426 BAH 8.70E-23 No_clan Blo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo04g00653 K25868 - zju:107417125 384.03