Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo04g00708 ATGGAGCCTTTTGAGGTTATTTATGCGCCGAGTTCCGGTAACGATCCGGAACTGGGGTCCAATAATTGCCTTTCTCGGAGTCCAGATCTTGATCCGGCGATTTCCGATTCTAATCAAGACGTTGGTATTTATTCGGAGCTTCAAAAATTGAAACTGAAGGAGGAGGATGGGGAGGTCGGAAAGGATTCCGGTGAAGGTGAAGTGGAAAATGTTCCTCAGAAGATCGAAGAGAGTGGCGGAGATGGAGGTAGCCAAAATGGGTGGGATTACGCGAATGAGAATGAGAATGAGAATGGGAATTCATGGGGTTGGGATGGGGATGGTGAATGGGAAGTGGAGAAGAAAGATGAGAGAAGTGAAGGAAGTTACATGTACCCTCTGAGACCTGATGCTGAAGATTGTGCGTTTTACCTGAAGACCGGAGCTTGTAAGTTCGGACCCAATTGCAAGTTCAATCACCCAGTTGGGAGAAATTATCAGATCGCCTTTGATCGGGCAGACATAGAAATCCTTATACAGTATTACCTGAAGACGGGTGGCTGTAAGTATGGAAATGCCTGTAGATTCAACCACACAAGACCCAAAGGATCCGATGAGTCAGATGAGAAAGAGTGTCCCTACTATATGCGCACTGGCTCCTGCAAGTATGGAGCAAACTGCAAGTTTAATCATCCCGACCCCACAGCCTCTGTTGAATCTTACCACCGAGGCTTTGGAGATGAGAGATCGTTATCACCATATGGCGCTTCAGAATCAGCAATTGCATCCAGGTCTTCGTCAAGGACTCTGAATGAAACTGTTCCATTTGTGCCTGTGGTAATTTCTCCTTCTCTAAGGACGCCTCAAATTCAGAATAGAATGGATCTCAAATGCTTCTACAGAAGGAGCATGTTTCAGCCAGCCGGTTTTGCTGTGAACAGCCCAGCAAAGGAAACCAAGCTCCGCAAGCATCCTCAGCAGCAGATGCATGGAGAAGAATTTCCCGAACGACCAGGTCAGCCTGAATGCAGCTACTTTCTAAGAACAGTTCCACTCGTTTTCTTCTCATCTCTAGCTTTGTTGAAAATGACAGTAAACCCTTCTGCTGAGGCTGGGTTGTTTACGTCCCATTCCCCAAATTTAGGCAATGGTCTACCTTTGTCCTCCTGCTCCAACGCAAAATGCAAACAAACACACATTATGGCATATTTGGAACCTGGCAATGCAGAAAGGGAGATAGTGCAATTGGTATTACCTAGGAAGCCCCGAATTTTACTAGCTGCTAGTGGAAGTGTGGCTGCAATAAAGTTTGGGAATTTGTGTCATTCTTTTGCTGAATGGGCCGATGTAAAAGCTGTCGTTACAAAGGCTTCTCTACATTTCCTTGACCGTGCATCACTACCAAGGGATGTCATTCTTTACACTGACAATGATGAATGGAACAGTTGGGATAAAATTGGCGATGCTGTACTCCACATTGAGCTTCATAAATGGGCTGATATTATGGTTATTGCTCCACTCTCTGCAAACACACTAGGCAAGATTGCTGGGGGAGTATGTGACAATTTAGTGACATGCGTTGTGCGAGCATGGGATTATGACAAGCCAATCTTTGTTGCACCAGCCATGAATACGTACATGTGGAAAAACCCTTTCACGGAACGACATCTTGTATTAATTGATGAGCTTGGAATTACGCACATTCCACCTGTCACAAAAAGATTGGCTTGTGGGGATTATGGAAATGGAGCAATGGCTGAACCTTCTTTAATCTACTCAACTGTGAGACTTTTCTTCGAATCACGAATGCGACAAAATGCCAGTAATAACCAGTGA 1815 45.07 MEPFEVIYAPSSGNDPELGSNNCLSRSPDLDPAISDSNQDVGIYSELQKLKLKEEDGEVGKDSGEGEVENVPQKIEESGGDGGSQNGWDYANENENENGNSWGWDGDGEWEVEKKDERSEGSYMYPLRPDAEDCAFYLKTGACKFGPNCKFNHPVGRNYQIAFDRADIEILIQYYLKTGGCKYGNACRFNHTRPKGSDESDEKECPYYMRTGSCKYGANCKFNHPDPTASVESYHRGFGDERSLSPYGASESAIASRSSSRTLNETVPFVPVVISPSLRTPQIQNRMDLKCFYRRSMFQPAGFAVNSPAKETKLRKHPQQQMHGEEFPERPGQPECSYFLRTVPLVFFSSLALLKMTVNPSAEAGLFTSHSPNLGNGLPLSSCSNAKCKQTHIMAYLEPGNAEREIVQLVLPRKPRILLAASGSVAAIKFGNLCHSFAEWADVKAVVTKASLHFLDRASLPRDVILYTDNDEWNSWDKIGDAVLHIELHKWADIMVIAPLSANTLGKIAGGVCDNLVTCVVRAWDYDKPIFVAPAMNTYMWKNPFTERHLVLIDELGITHIPPVTKRLACGDYGNGAMAEPSLIYSTVRLFFESRMRQNASNNQ 604
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 6495751 6506981 - BLOR13620 Blo04g00708 59736

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo04g00708 604 Gene3D - 414 604 IPR036551 GO:0003824
Blo04g00708 604 SUPERFAMILY CCCH zinc finger 202 227 IPR036855 GO:0046872
Blo04g00708 604 ProSiteProfiles Zinc finger C3H1-type profile. 128 156 IPR000571 GO:0046872
Blo04g00708 604 ProSiteProfiles Zinc finger C3H1-type profile. 171 194 IPR000571 GO:0046872
Blo04g00708 604 PANTHER BNAA01G27100D PROTEIN 410 595 - -
Blo04g00708 604 PANTHER HOMO-OLIGOMERIC FLAVIN CONTAINING CYS DECARBOXYLASE FAMILY 410 595 - -
Blo04g00708 604 Gene3D - 107 162 - -
Blo04g00708 604 MobiDBLite consensus disorder prediction 14 44 - -
Blo04g00708 604 SUPERFAMILY CCCH zinc finger 127 156 IPR036855 GO:0046872
Blo04g00708 604 Gene3D - 169 236 - -
Blo04g00708 604 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 173 191 IPR000571 GO:0046872
Blo04g00708 604 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 202 225 IPR000571 GO:0046872
Blo04g00708 604 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 132 154 IPR000571 GO:0046872
Blo04g00708 604 ProSiteProfiles Zinc finger C3H1-type profile. 199 227 IPR000571 GO:0046872
Blo04g00708 604 SMART c3hfinal6 201 226 IPR000571 GO:0046872
Blo04g00708 604 SMART c3hfinal6 171 193 IPR000571 GO:0046872
Blo04g00708 604 SMART c3hfinal6 128 155 IPR000571 GO:0046872
Blo04g00708 604 MobiDBLite consensus disorder prediction 85 101 - -
Blo04g00708 604 SUPERFAMILY Homo-oligomeric flavin-containing Cys decarboxylases, HFCD 414 592 IPR036551 GO:0003824
Blo04g00708 604 MobiDBLite consensus disorder prediction 1 108 - -
Blo04g00708 604 MobiDBLite consensus disorder prediction 47 74 - -
Blo04g00708 604 Pfam Flavoprotein 416 589 IPR003382 GO:0003824
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo04g00708 K01598 PPCDC, coaC; phosphopantothenoylcysteine decarboxylase [EC:4.1.1.36] - csv:101211378 357.451
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Blo04g00708 Blo16g00248 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo04g00708 Blo-Chr4:6495751 Blo11g00410 Blo-Chr11:3563205 1.91E-06 dispersed
Blo16g00249 Blo-Chr16:5710953 Blo04g00708 Blo-Chr4:6495751 1.37E-140 transposed
Blo13g00338 Blo-Chr13:19554422 Blo04g00708 Blo-Chr4:6495751 4.00E-07 wgd
Blo15g00230 Blo-Chr15:2389382 Blo04g00708 Blo-Chr4:6495751 2.52E-09 wgd
Blo16g00248 Blo-Chr16:5696939 Blo04g00708 Blo-Chr4:6495751 4.01E-06 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g893 Blo04g00708 Blo16g00248 . . . Bpe13g00218 Bma06g00242 . Cmo13g00808 Cmo18g00184 . . . . . Cpe20g00333 . . . . . . . . . . . . . . . Cone2ag0950 Cone16ag0051 . . Lsi02g00466 Csa01g00921 Chy12g01205 Cme12g01626 . . Bda11g01626 Bda14g00777 . Bpe15g00167 Bma03g00756 . Sed08g2465 . . Cma13g00777 Cma18g00208 Car13g00625 Car18g00202 Cpe09g00988 . Bhi08g01694 Tan05g2898 Cmetu12g0034 Lac10g0537 Hepe07g2163 . . Cla03g00322 Cam03g0338 Cec03g0330 Cco03g0344 Clacu03g0340 Cmu03g0946 Cre03g0639 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004285 3 1 3 2 2 1 2 1 1 1 1 1 1 1 1 1 1 3 2 1 1 1 1 1 1 2 1 2 1 2 43
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
12291 PF02441 Flavoprotein 4.40E-43 No_clan Blo TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo04g00708 Blo_Chr04 FPKM 3.155629 3.039336 0.369187 0.764735 1.994921 2.118333 2.249871 0.0 0.0 0.0