Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo04g00710 ATGGATGAGAGTTCGATTCCGCCGCCTAAGGTCGTCGTTTTGGCGGACCTTAACGTTGATCCTCCTGAAATGGATGACGACGACTCTGTCCCCGTTTCTGCTCCAGATATTAATAGATTGCCTATCGATGACAACAATCAAGATAAAAGTACGTTAATGAATAAAGAAAATGATGCTGTGGAAGTTGAAGGTAGTAAACGCGGAAACAAATTTGGGAAATGCCGTTCAAGAATAAGTAAAGCTGATTGCTCCGGTGATTATGGACCCGAAGCTGATGCTGATCATCAAGGTCCAGGAGTTTCCTCATCTCGTGAAGAAAAAGTCAGCAGCCTCAAAACTGGTTTGGCTCATGTTGCAAGGAAGATGCCAAAAAATGCTCATGCTCATTTTGTTCTTGGCCTAATGTACCAAAGAGTTGGGCAACCACAGAAGGCAGTTGCAGCATACGAGAAGGCAGAGGAGATCTTACTTCGTTCTGATTCTGGGATTGATAGGCCAGAGTTTCTGTCAATGGTTCAAATCCACCATGCGCAGTGCCTTCCACTAGAAACTGCTGGGGATAGGTCAGATAAAGAACTTGAGCGTGAAGAGCTTGAGGAAATTTGCAATAGACTTAAGGAGTCGATGCAATCTGATGTTAGACAGGCAGCTTTATGGAATACTGTAGGCTTGATGCATCTTACAACTGGTCGTCTGCAGAATGCGATTGCTGTTTTTTCTTCTTTATTGAGCATTGTTCCCGACAACTATGATTGCCTTGGAAACCTTGGAATTGCTTATCTTCAAAGCGGAAATGTGGAACAATCAGAAAAATGTTTTCAAGAATTGATTTTGAAGGATCAAAATCACCCTGCTGCCTTAATCAACTATGCTGCTCTGCTCTTATGCAAGTATGGTGCAATTGTTGCCGGGGCTGGGGCAAATTCTGGGGAAGGATCTTCTGTGAATCAGATCAAAGGTATAACTGTTGCAAAAGAGTGTTTGCTGACAGCTTTAAAAGCAGATCCAAAAGCAGCTCATTTATGGGCAAATCTTGCTAATGCATACCATATTATTGGTGATCACAGAAGTTCTGGGAAGTGCTTGGAGAAGGTGGCAAAACTTGAACCCAATTGCATGTCTATGCGGTATTCCATTGCCGTGCACCGAATCAAGGATGCAGAGAGATCCCAAGATCCAAGTGAACAACTTACCTGGGCAGGAAACGAAATGGCCTCAATAATAAGAGATGGAGATGGTTCTATAATTGAGCATCCTATAGCATGGGCAGGGCTTGCCATGGCACAGAAGGCCCAACATGAGATTTCTGCAGCATTTCAAATTGAGCGGTCTGAGCTAATGGAGGCTGAAGAGCGAGCGGTTCATAGTTTAAAACAGGCAATATCTGAGGATCCTGATGATGCAGTGCAGTGGCATCAACTTGGCCTGCACAGCCTTTGTACTAGGCAGTTCAAAGCATCACAAAGGTATCTCAAATCTGCTGTTGCTCGCTTCAAAGATTGCAGCTATGCATGGTCAAATCTTGGCGTTTCACTACAACTGTCAGAAGAGCCGTTACATGCTGAAGAAGTATACAAGCGCGCCTTGGAATTGGCCACTGAAAACTGCGCACATGTGATATTCTCGAACCTTGGAAATCTCTACAGGCAGCAAAAACAGTATGAGCGTGCCAAAGCCATGTTTTCAAAGTCTCTGGACCTGCAGCCTGGCTATGCACCTGCATTTAACAATCTCGGCCTTGTATTTGTTGCCGAAGGTCAATGGGAAGAAGCTAAATATTGTTTTGACAAAGCCCTGCATGTTGACCCATTACTTGACGCAGCCAAATCTAATGTGATTAAAGCGGAAGCCATGTCAAAATTTTGTAGCAGCTAG 1875 44.11 MDESSIPPPKVVVLADLNVDPPEMDDDDSVPVSAPDINRLPIDDNNQDKSTLMNKENDAVEVEGSKRGNKFGKCRSRISKADCSGDYGPEADADHQGPGVSSSREEKVSSLKTGLAHVARKMPKNAHAHFVLGLMYQRVGQPQKAVAAYEKAEEILLRSDSGIDRPEFLSMVQIHHAQCLPLETAGDRSDKELEREELEEICNRLKESMQSDVRQAALWNTVGLMHLTTGRLQNAIAVFSSLLSIVPDNYDCLGNLGIAYLQSGNVEQSEKCFQELILKDQNHPAALINYAALLLCKYGAIVAGAGANSGEGSSVNQIKGITVAKECLLTALKADPKAAHLWANLANAYHIIGDHRSSGKCLEKVAKLEPNCMSMRYSIAVHRIKDAERSQDPSEQLTWAGNEMASIIRDGDGSIIEHPIAWAGLAMAQKAQHEISAAFQIERSELMEAEERAVHSLKQAISEDPDDAVQWHQLGLHSLCTRQFKASQRYLKSAVARFKDCSYAWSNLGVSLQLSEEPLHAEEVYKRALELATENCAHVIFSNLGNLYRQQKQYERAKAMFSKSLDLQPGYAPAFNNLGLVFVAEGQWEEAKYCFDKALHVDPLLDAAKSNVIKAEAMSKFCSS 624
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 6530088 6534994 - BLOR13622 Blo04g00710 59738

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo04g00710 624 Pfam Tetratricopeptide repeat 126 155 IPR019734 GO:0005515
Blo04g00710 624 Pfam Tetratricopeptide repeat 339 372 IPR019734 GO:0005515
Blo04g00710 624 ProSiteProfiles TPR repeat profile. 126 159 IPR019734 GO:0005515
Blo04g00710 624 Gene3D Tetratricopeptide repeat domain 104 158 IPR011990 GO:0005515
Blo04g00710 624 MobiDBLite consensus disorder prediction 18 109 - -
Blo04g00710 624 Gene3D Tetratricopeptide repeat domain 417 525 IPR011990 GO:0005515
Blo04g00710 624 ProSiteProfiles TPR repeat profile. 572 605 IPR019734 GO:0005515
Blo04g00710 624 ProSiteProfiles TPR repeat region circular profile. 572 603 - -
Blo04g00710 624 SUPERFAMILY TPR-like 418 527 IPR011990 GO:0005515
Blo04g00710 624 PANTHER TETRATRICOPEPTIDE REPEAT (TPR)-CONTAINING PROTEIN 7 623 - -
Blo04g00710 624 Pfam Tetratricopeptide repeat 540 599 - -
Blo04g00710 624 PANTHER TETRATRICOPEPTIDE REPEAT (TPR)-CONTAINING PROTEIN-RELATED 7 623 - -
Blo04g00710 624 ProSiteProfiles TPR repeat profile. 339 372 IPR019734 GO:0005515
Blo04g00710 624 Gene3D Tetratricopeptide repeat domain 316 407 IPR011990 GO:0005515
Blo04g00710 624 Pfam Tetratricopeptide repeat 230 285 - -
Blo04g00710 624 ProSiteProfiles TPR repeat profile. 538 571 IPR019734 GO:0005515
Blo04g00710 624 Coils Coil 188 215 - -
Blo04g00710 624 Gene3D Tetratricopeptide repeat domain 526 621 IPR011990 GO:0005515
Blo04g00710 624 SUPERFAMILY TPR-like 118 159 IPR011990 GO:0005515
Blo04g00710 624 Gene3D Tetratricopeptide repeat domain 187 298 IPR011990 GO:0005515
Blo04g00710 624 SMART tpr_5 126 159 IPR019734 GO:0005515
Blo04g00710 624 SMART tpr_5 572 605 IPR019734 GO:0005515
Blo04g00710 624 SMART tpr_5 468 501 IPR019734 GO:0005515
Blo04g00710 624 SMART tpr_5 216 249 IPR019734 GO:0005515
Blo04g00710 624 SMART tpr_5 339 372 IPR019734 GO:0005515
Blo04g00710 624 SMART tpr_5 538 571 IPR019734 GO:0005515
Blo04g00710 624 SMART tpr_5 502 535 IPR019734 GO:0005515
Blo04g00710 624 SMART tpr_5 250 283 IPR019734 GO:0005515
Blo04g00710 624 MobiDBLite consensus disorder prediction 49 80 - -
Blo04g00710 624 SUPERFAMILY TPR-like 216 603 IPR011990 GO:0005515
Blo04g00710 624 ProSiteProfiles TPR repeat profile. 216 249 IPR019734 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo04g00710 - - - qsu:112032736 934.865
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo04g00710 Blo-Chr4:6530088 Blo12g00518 Blo-Chr12:23091435 8.35E-09 dispersed
Blo04g00710 Blo-Chr4:6530088 Blo12g01128 Blo-Chr12:28901297 4.71E-06 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g884 Blo04g00710 . . . . . . . Cmo13g00806 . . . . . . Cpe20g00336 . . . . . . . . . . . . . . . . . Cone13ag0196 . Lsi02g00462 Csa01g00919 Chy12g01208 Cme12g01629 . . . Bda14g00783 . Bpe15g00663 Bma03g00758 . . . . Cma13g00775 . Car13g00621 . . . Bhi08g01689 . . Lac10g0534 . . . Cla03g00319 . . . Clacu03g0337 Cmu03g0943 . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009614 2 2 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 32
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo04g00710 Blo_Chr04 FPKM 10.16358 11.310304 14.495985 14.968977 11.378228 13.401944 15.222516 19.094984 16.343184 14.646894