Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo04g00712 AAAACCTACTGCATTTTCTTTCTTTTTCGCAGAAGCATCAATGGCTCCAGGGGAGACCTTGGGTACCTCTCTTGCGGCACCGGAAACCCTATCGACGATTGCTGGCGGTGCGACCCGAAATGGGAAAACAATCGACAGCGCCTAGCCGATTGCGCAATCGGGTTCGGCAAAAACGCCGTCGGAGGCCGCGACGGTAGGATCTACGTAGTCACTGACGATGGCGACGACGACCCAGTGAAGCCGAAACCCGGTACACTCCGATACGCAGTGATTCAAGACGAACCGCTCTGGATAATTTTCGACAGTGACATGGTGATAAAACTGAAAGAAGAACTGATAATGAATTCTTTCAAAACCATCGATGGGAGAGGGGCCAACGTCCATATTTCCGGGGGACCTTGCATTACGATACAATTCGTGACAAATATTATCATCCACGGTCTCCATATCCAAGACTGTAAGCAAGGGGGGAATGCTTACGTGCGGGACTCCCCACAACACTATGGGTGGAGAACTGTATCGGACGGAGATGGGGTTTCAATCTTCGGTGGTAGCCATGTTTGGGTCGATCATTGCTCTTTGTCGAACTGTAACGACGGCCTGATCGATGCGATTCATGGGTCTACGGCTATTACGATTTCAAATAATTATATGACACATCATAATAAGGTAATGTTGTTAGGTCACAGCGATTCATTCAGTCTGGACAAGAACATGCAGGTCACCATTGCCTTTAATCACTTTGGAGAAGGCCTAATACAAAGAATGCCCAGGCAAACTTTTGAATTTAATCAAGTCAATAAAATGTGCAGGTGTAGGCATGGGTATTTTCATGTGGTCAACAACGACTACACCCATTGGGAAATGTATGCCATTGGAGGGAGCGCATCCCCTACGATCAATAGCCAAGGCAACCGATTTCTTGCCCCAGACGACAGATTCAACAAAGAGGTGACGAAGCGTGAGGATGCACCGGAGAGCGACTGGAAGGGATGGAATTGGAGGTCGGAGGGAGACTTGTTGTTAAACGGTGCGTTTTTCACGGAATCTGGGGCTGGAGCTTCTTCAAGCTATGCTAAAGCTTCGAGCTTGGGTGCTAGGCCATCTACCCTAGTTGGTTCCATTACAGTGGGCGCGGGTGCACTCGATTGCAAGAGGGGCTCGCGCTGC 1170 49.32 KTYCIFFLFRRSINGSRGDLGYLSCGTGNPIDDCWRCDPKWENNRQRLADCAIGFGKNAVGGRDGRIYVVTDDGDDDPVKPKPGTLRYAVIQDEPLWIIFDSDMVIKLKEELIMNSFKTIDGRGANVHISGGPCITIQFVTNIIIHGLHIQDCKQGGNAYVRDSPQHYGWRTVSDGDGVSIFGGSHVWVDHCSLSNCNDGLIDAIHGSTAITISNNYMTHHNKVMLLGHSDSFSLDKNMQVTIAFNHFGEGLIQRMPRQTFEFNQVNKMCRCRHGYFHVVNNDYTHWEMYAIGGSASPTINSQGNRFLAPDDRFNKEVTKREDAPESDWKGWNWRSEGDLLLNGAFFTESGAGASSSYAKASSLGARPSTLVGSITVGAGALDCKRGSRC 390
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 6558464 6559778 + BLOR13624 Blo04g00712 59740
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Blo04g00712 390 PRINTS Pollen allergen Amb family signature 111 127 IPR018082 -
Blo04g00712 390 PRINTS Pollen allergen Amb family signature 332 356 IPR018082 -
Blo04g00712 390 PRINTS Pollen allergen Amb family signature 361 384 IPR018082 -
Blo04g00712 390 PRINTS Pollen allergen Amb family signature 290 309 IPR018082 -
Blo04g00712 390 PRINTS Pollen allergen Amb family signature 268 287 IPR018082 -
Blo04g00712 390 PRINTS Pollen allergen Amb family signature 75 100 IPR018082 -
Blo04g00712 390 PRINTS Pollen allergen Amb family signature 51 68 IPR018082 -
Blo04g00712 390 PANTHER PECTATE LYASE 18-RELATED 13 387 IPR045032 GO:0030570
Blo04g00712 390 Pfam Pectate lyase 109 307 IPR002022 -
Blo04g00712 390 Gene3D - 28 383 IPR012334 -
Blo04g00712 390 SUPERFAMILY Pectin lyase-like 14 382 IPR011050 -
Blo04g00712 390 PANTHER PECTATE LYASE 13 387 - -
Blo04g00712 390 SMART amb_all 103 313 IPR002022 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Blo04g00712 Blo16g00243 BCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo04g00712 Blo-Chr4:6558464 Blo14g00306 Blo-Chr14:3136127 0 dispersed
Blo16g00243 Blo-Chr16:5643367 Blo04g00712 Blo-Chr4:6558464 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo04g00712 K01728 - pop:7494805 676.781