Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo04g00717 ATGGCCTTAGCCTCTATGGGTAACAGCGCTCCCAAAAAGTACGATGAAATCGACGCTGCCCCTGAGGAGAGAGCTCGGGGTATCACTATCAACACTGCGACCGTCGAGTACGAGACGGAAAGCCGACATTATGCTCACGTCGATTGCCCTGGCCACGCGGATTATGTCAAAAACATGATCACTGGTGCGGCACAAATGGACGGCGCAATTCTTGTAGTTTCCGGAGCAGACGGCCCAATGCCCCAAACTAAGGAGCATATTTTGTTGGCTAAGCAAGTGGGTGTGCCTAATATGGTTGTTTTTCTCAACAAGCAAGATCAGGTAGATGATGAGGAGCTTTTGCAGCTCGTTGAATTGGAGGTGCGTGAATTACTTTCATCCTATGAATTCCCTGGTGATGATGTACCTATTGTCTCTGGTTCTGCTTTATTAGCCCTTGAGGCTTTAATGGCTAATCCCAAGATTAAAAGAGGAGAAAACCAATGGGTAGATAAAATTTATGAACTTATGGATTCTGTAGATAGTTACATACCAATTCCCCAAAGACAAACAGATCTTCCTTTTTTACTTGCTGTTGAAGATGTGTTTTCAATTACTGGTCGTGGAACTGTGGCGACTGGCCGTGTTGAGAGAGGCACGGTCAGAGTTGGTGAAACTGTGGAGATTGTTGGGTTGAAGGACACTAGAAACACTACTGTTACTGGAGTGGAGATGTTTCAAAAGATTCTTGACGAGGCCATGGCTGGGGATAATGTGGGGATATTGCTGAGAGGTATTCAGAAGACCGATATACAGAGAGGAATGGTTTTGGCTAAGCCTGGCTCCATTACTCCACACACCAAGTTCACTGCAATTGTTTATGTGTTGAAGAAAGAAGAGGGTGGAAGGCATTCCCCCTTTTTCGCTGGATATAGGCCTCAATTTTACATGAGAACTACTGACGTGACCGGAAAAGTGACCTCCATCATGAATGATAAGGACGAGGAGTCTAAGATGGTTATGCCTGGAGATCGTGTCAAAATGGTTGTCGAACTGATAATGCCAGTTGCTTGCGAGCAGGGAATGAGATTTGCCATCAGAGAAGGTGGGAAGACTGTCGGAGCTGGTGTCATTCAATCGATCGTGGAGTGA 1131 45.89 MALASMGNSAPKKYDEIDAAPEERARGITINTATVEYETESRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSGADGPMPQTKEHILLAKQVGVPNMVVFLNKQDQVDDEELLQLVELEVRELLSSYEFPGDDVPIVSGSALLALEALMANPKIKRGENQWVDKIYELMDSVDSYIPIPQRQTDLPFLLAVEDVFSITGRGTVATGRVERGTVRVGETVEIVGLKDTRNTTVTGVEMFQKILDEAMAGDNVGILLRGIQKTDIQRGMVLAKPGSITPHTKFTAIVYVLKKEEGGRHSPFFAGYRPQFYMRTTDVTGKVTSIMNDKDEESKMVMPGDRVKMVVELIMPVACEQGMRFAIREGGKTVGAGVIQSIVE 376
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 6604747 6605877 + BLOR13629 Blo04g00717 59745

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo04g00717 376 CDD EFTU_III 277 371 - -
Blo04g00717 376 ProSiteProfiles Translational (tr)-type guanine nucleotide-binding (G) domain profile. 1 181 IPR000795 GO:0003924|GO:0005525
Blo04g00717 376 MobiDBLite consensus disorder prediction 1 20 - -
Blo04g00717 376 Gene3D Translation factors 183 311 - -
Blo04g00717 376 Pfam Elongation factor Tu domain 2 202 270 IPR004161 GO:0005525
Blo04g00717 376 PANTHER ELONGATION FACTOR TU-RELATED 1 376 - -
Blo04g00717 376 CDD EFTU_II 188 274 IPR033720 -
Blo04g00717 376 ProSitePatterns Translational (tr)-type guanine nucleotide-binding (G) domain signature. 18 33 IPR031157 -
Blo04g00717 376 Gene3D - 3 180 IPR027417 -
Blo04g00717 376 Pfam Elongation factor Tu C-terminal domain 275 374 IPR004160 -
Blo04g00717 376 SUPERFAMILY EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain 275 375 IPR009001 -
Blo04g00717 376 TIGRFAM EF-Tu: translation elongation factor Tu 2 376 IPR004541 GO:0003746|GO:0005525|GO:0006414
Blo04g00717 376 Gene3D Translation factors 315 375 - -
Blo04g00717 376 Pfam Elongation factor Tu GTP binding domain 12 178 IPR000795 GO:0003924|GO:0005525
Blo04g00717 376 PRINTS GTP-binding elongation factor signature 98 107 IPR000795 GO:0003924|GO:0005525
Blo04g00717 376 PRINTS GTP-binding elongation factor signature 61 72 IPR000795 GO:0003924|GO:0005525
Blo04g00717 376 PRINTS GTP-binding elongation factor signature 25 33 IPR000795 GO:0003924|GO:0005525
Blo04g00717 376 PRINTS GTP-binding elongation factor signature 45 55 IPR000795 GO:0003924|GO:0005525
Blo04g00717 376 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 8 203 IPR027417 -
Blo04g00717 376 SUPERFAMILY Translation proteins 182 278 IPR009000 -
Blo04g00717 376 PANTHER ELONGATION FACTOR TU 1 376 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo04g00717 K02358 tuf, TUFM; elongation factor Tu - csin:114290197 693.345
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo04g00717 Blo-Chr4:6604747 Blo05g00350 Blo-Chr5:4099564 8.38E-160 dispersed
Blo16g00232 Blo-Chr16:5205311 Blo04g00717 Blo-Chr4:6604747 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g834 Blo04g00717 . . . . . Bma06g00224 . . . Cma10g00090 Cma11g00064 Car10g00079 Car11g00058 Sed08g0074 . Cpe04g01586 Bhi02g00598 Tan09g2310 Cmetu02g0003 . . . . Cla06g01704 Cam06g1892 Cec06g1941 Cco06g1945 Clacu06g1848 Cmu06g1789 Cre06g2604 Cone2ag0932 Cone16ag0071 . . . . . . . . . . . Bpe15g00654 Bma03g00766 . . Cmo10g00093 Cmo11g00067 . . . . . Cpe18g00872 . . . . . . . . . . . . . . Lsi06g01592 . . Cme02g02012
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006341 1 1 2 2 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 1 0 38
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo04g00717 Blo_Chr04 FPKM 6.3472 8.014985 2.319654 2.577442 20.617641 21.563208 20.55821 0.114253 0.0 0.102014