Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo04g00719 ATGGATGGACTGAGGGCAAAAATTTGTAGTCTTTTTAACTTTCCCCCCGATGCTGATCTGAAAATGACTTATATTGATGAAGATGGTGATGCGGTGACCTTGGTCGATGATGATGATCTGTTTGATGTGATCAGGCAACGATTGAAATTCTTGAGGATTGACGTTCGATTGAGTAAAGAGAAAAGTAGTAAAACTAGTGTTTGGTCAAGTGGAAGTTCCACCCCACTTAGATCTCCTCAGACTGAGAATCGTTTATCAAATATTAATGCTGGTGTTGCTGAGATTTTGAAACCTTTGCCAGAGCCTGTTCATGAGGCACTTTCAAAGCTCTATAGTGACATTTCTTCAAAGGTTACTTTGTCTAATCCTATTACGGCAGACCTTGTTGAAGGCCTTGTTCATCTGAGTAACTCGTACCGAAAGTCAGATTCACAGCCTCCCACTGGTGCAGAGTCAAGCACACAGAATGTTGCCTTTGAGACCCCAATGTCTCCTTCTAAAGAAACTAACGAAGAGAAAGATAAGGAGACAACCCCTTGTTTTCCTGGTGGAATTTCCGGGAATGATTCTGTCTTTGTAAGGATGAGTGGTACAGAGCAAGAATATCTAAATGAGTGTCCATACAGTGGAGTACCTATATCTGGTGACTTTCCTTTTCCTCCGATTTCGCACAGTTACATTCATCCAGCTAAAAGAAGCTTCAGCCTATGTGCAGCAGATTGGGGCACCGTGTTTCATAGGGGTGTTATTTGTGATGGCTGTGGAGTACATCCAATAACGGGACCACGAAAGAAGACTTTGATCTCTGCAGCATGTGTTTTGCAAAGATGGGAAATGAAGCTGATTACTTTAGAATGGAACATCCAATCTCCTATCGGCATTCACGTTCTTTCCGAGGATTACATCATCAGGCATCGTCTATGGATGGGCCCTCAATTACCACGTATTTTGAAAGGATGTGGAGCTAAGGCTGGTCGACCTAAACTAGAGAGCCGCTTCATTATGGATGTTAATGTCTTGGATGGGACTATTATGGCTCCATTTACTCCATTCACCAAAATATGGAGAATGCGTAATAATGGCACATTGGATTGGCCAAAAGGAACTCAGCTTCAATGGATTGGAGGAGATAAATTCAGTCATGCCATTTCAGTTGAGATAGAGATTTCTGCTGGGTGTATTCCTGTGGATAATGAAGTAGATATTGCAGTGGATTTTATTGCGCCTGAGTTGCCAGGTCGATACATCTCATATTGGAGGATGGCGGCTCCATCTGGTCAGAAGTTTGGGCAACGTGTTTGGGTTCTCATCCAGGTTGACGCTTCTCTTAGCAGGACTCTTTCAGCTAGTTTGCAAGATTTGAACCTGAATCTTCCCCCGCCAAGTGACATGACTAATGGGCCTAAAACAATTGATATAAATGTTGAACCCTGTGAAAACAACTCCTTCCTCCAGGCCAATCCAGTGAAACCAGCTGATGAACTGCCTAAAAACGTGAGTGAGATGTATTTTCCCATTGATGACACCTTGCTAGTTGGTCAGAGTTTTCCTTGCCCGACGGTCCCTACAGCTCCTGCTCCCCCTGCATCTTCTTCAGCTGTATCTACTGTTCTTGGCAACCAAAAACTTCCTGTGCCTACTGCTCCAGAGTCTTCTTCAGCTGGGGACAAAAAATTTCCAGTTTCTGCTTCTCAGATTCCTCCACTGATGTACCCCATCATTGATGTTTCCATACCCAGCCCTGTCATTGTTACCCGTCCACCATCTGAAGACAGCATTGCCAAAGAAATCGAGGAGTCCCTCCTTAAAGAGCTCGAGGAGATGGGGTTCAAACAGGTTGATTTGAACAAAGAAGTCTTGAGGATCAACGAGTACAATTTGCAACAGTCAGTGGATGATCTCTGTGGAGTGTCTGAATGGGATCCAATTCTTGAAGAGTTGGAAGAAATGGGATTCTGCGATAAGGTGATGAACAAGAAGCTGTTGGTGAAGAATAATGGTAGCATCAAGCACGTGGTCATGGATCTCATCTCAGGGGAGAAGGCTTAG 2049 43.92 MDGLRAKICSLFNFPPDADLKMTYIDEDGDAVTLVDDDDLFDVIRQRLKFLRIDVRLSKEKSSKTSVWSSGSSTPLRSPQTENRLSNINAGVAEILKPLPEPVHEALSKLYSDISSKVTLSNPITADLVEGLVHLSNSYRKSDSQPPTGAESSTQNVAFETPMSPSKETNEEKDKETTPCFPGGISGNDSVFVRMSGTEQEYLNECPYSGVPISGDFPFPPISHSYIHPAKRSFSLCAADWGTVFHRGVICDGCGVHPITGPRKKTLISAACVLQRWEMKLITLEWNIQSPIGIHVLSEDYIIRHRLWMGPQLPRILKGCGAKAGRPKLESRFIMDVNVLDGTIMAPFTPFTKIWRMRNNGTLDWPKGTQLQWIGGDKFSHAISVEIEISAGCIPVDNEVDIAVDFIAPELPGRYISYWRMAAPSGQKFGQRVWVLIQVDASLSRTLSASLQDLNLNLPPPSDMTNGPKTIDINVEPCENNSFLQANPVKPADELPKNVSEMYFPIDDTLLVGQSFPCPTVPTAPAPPASSSAVSTVLGNQKLPVPTAPESSSAGDKKFPVSASQIPPLMYPIIDVSIPSPVIVTRPPSEDSIAKEIEESLLKELEEMGFKQVDLNKEVLRINEYNLQQSVDDLCGVSEWDPILEELEEMGFCDKVMNKKLLVKNNGSIKHVVMDLISGEKA 682
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 6612328 6615282 - BLOR13631 Blo04g00719 59747

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo04g00719 682 SUPERFAMILY UBA-like 640 677 IPR009060 GO:0005515
Blo04g00719 682 MobiDBLite consensus disorder prediction 138 165 - -
Blo04g00719 682 PANTHER PROTEIN JOKA2 188 515 - -
Blo04g00719 682 PANTHER PROTEIN JOKA2 554 680 - -
Blo04g00719 682 PANTHER PROTEIN JOKA2 1 147 - -
Blo04g00719 682 SUPERFAMILY CAD & PB1 domains 2 55 - -
Blo04g00719 682 CDD NBR1_like 327 440 IPR032350 -
Blo04g00719 682 Pfam Ig-like domain from next to BRCA1 gene 338 439 IPR032350 -
Blo04g00719 682 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 596 634 IPR015940 -
Blo04g00719 682 MobiDBLite consensus disorder prediction 138 181 - -
Blo04g00719 682 PANTHER OVARIAN CARCINOMA ANTIGEN CA125-RELATED 188 515 - -
Blo04g00719 682 PANTHER OVARIAN CARCINOMA ANTIGEN CA125-RELATED 554 680 - -
Blo04g00719 682 PANTHER OVARIAN CARCINOMA ANTIGEN CA125-RELATED 1 147 - -
Blo04g00719 682 Gene3D - 1 57 - -
Blo04g00719 682 Pfam PB1 domain 2 46 IPR000270 GO:0005515
Blo04g00719 682 Gene3D - 639 680 - -
Blo04g00719 682 Gene3D - 591 638 - -
Blo04g00719 682 Gene3D Immunoglobulins 324 443 IPR013783 -
Blo04g00719 682 CDD UBA_NBR1 639 677 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo04g00719 K17987 NBR1; next to BRCA1 gene 1 protein - rcu:8278286 508.449
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g826 Blo04g00719 . . . . . . . Cmo13g00893 Cmo18g00152 . . . . . Cpe20g00262 . . . . . . . . . . . . . . . . . Cone13ag0168 Cone19ag0165 . Csa01g00883 Chy12g01240 Cme12g01663 . . . Bda14g00797 . Bpe15g00653 Bma03g00769 . Sed01g1623 . . Cma13g00862 Cma18g00191 Car13g00705 Car18g00183 Cpe09g01004 . Bhi08g01660 Tan05g1970 Cmetu12g0808 . . . . Cla03g00287 Cam03g0304 Cec03g0298 Cco03g0313 Clacu03g0305 Cmu03g0915 Cre03g0607 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004955 1 2 1 1 1 2 2 2 2 1 2 2 2 1 1 2 2 2 2 2 1 1 0 1 1 0 1 1 1 1 41
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo04g00719 Blo_Chr04 FPKM 5.494333 4.415032 23.870415 20.879213 1.101102 1.712236 1.207466 62.541737 63.998367 56.221024