Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo04g00721 ATGATGTCACCAGAAATAGTGGAGATAGAAGAGAGCAAGAGTTTTGGTAGTGGGTTGAATGGAGTGGGAAATGATGTTTATGTAACAGTCGGTAAAGATGATTTGGATGTTCTGAAATGGGCTATTGATCATGCCCTCTCTCCTGGTTCTCGAGTTTATCTGGTTCATGTCTTCCCTCCTTTGACCTACATAGCCACCCCTGTGGGGAGATTGTCGAAGAGCCAACTGAGCAAAGAGCAGGTGAGAATCTACGTTAACGAAGAGAACAACAGAAGGAGGAACCTTCTGCAGAAATACATCAGACTTTGCAATGATTCTAAGGTAGTGGTCGATACAATGCTACTGGAGAGCAATAATACAGCAAAGGCCATCGTCGAGCTAATCCCTGTGCTTAACATTACCCATCTCGTCATCGGTACCAAACGCCCTCTTTCCTCCAGGAGGTTGAGGAAGAAGATAGGCAAAGGAGACTATGTGAAGAAGAATGCGCCAGAATACTGTGAAGTGAGTGTGGTCTGCAATGGGAAGAAGGTGGCTCAAGATAACCCACCCTTAATTCCTTCACCCCTACCACCATCATCCCGACCCAACTTCTTCAACTGCGCTTGCTTCCCGGCTGGAAGATTCTCGCCGCGTTAA 639 46.64 MMSPEIVEIEESKSFGSGLNGVGNDVYVTVGKDDLDVLKWAIDHALSPGSRVYLVHVFPPLTYIATPVGRLSKSQLSKEQVRIYVNEENNRRRNLLQKYIRLCNDSKVVVDTMLLESNNTAKAIVELIPVLNITHLVIGTKRPLSSRRLRKKIGKGDYVKKNAPEYCEVSVVCNGKKVAQDNPPLIPSPLPPSSRPNFFNCACFPAGRFSPR 212
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 6645282 6646289 + BLOR13633 Blo04g00721 59749

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo04g00721 212 Pfam Universal stress protein family 36 147 IPR006016 -
Blo04g00721 212 Gene3D HUPs 26 152 IPR014729 -
Blo04g00721 212 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 52-LIKE 1 205 - -
Blo04g00721 212 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 52-LIKE 1 205 - -
Blo04g00721 212 CDD STK_N 26 175 - -
Blo04g00721 212 SUPERFAMILY Adenine nucleotide alpha hydrolases-like 33 141 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo04g00721 - - - vvi:100852504 254.988
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Blo04g00721 Blo16g00236 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo04g00721 Blo-Chr4:6645282 Blo13g01009 Blo-Chr13:32441048 5.57E-43 dispersed
Blo01g00962 Blo-Chr1:25065883 Blo04g00721 Blo-Chr4:6645282 1.87E-36 transposed
Blo16g00236 Blo-Chr16:5273322 Blo04g00721 Blo-Chr4:6645282 6.68E-115 wgd
Blo16g00236 Blo-Chr16:5273322 Blo04g00721 Blo-Chr4:6645282 6.68E-115 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g812 Blo04g00721 Blo16g00236 . . . . . . . . . . . . . . . Bhi02g00511 . . . Hepe09g0232 . . Cla06g01694 Cam06g1882 Cec06g1929 Cco06g1934 Clacu06g1838 Cmu06g1780 Cre06g2595 . . Cone13ag0165 Cone19ag0162 . . . . . . . Bda14g00799 . Bpe15g00651 Bma03g00771 . . . . . . . . . . . . . . . . . . . . . . . . . Csa01g00113 Chy02g02612 Cme02g02009
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006923 2 2 2 1 2 2 0 2 2 2 2 2 0 1 1 0 2 2 0 2 2 1 1 0 0 1 0 1 0 1 36
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo04g00721 Blo_Chr04 FPKM 9.040663 9.398604 6.056889 6.996795 6.778942 6.876754 7.961679 7.300254 7.324829 6.801463