Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo04g00728 ATGGAGGGCACCGTGCGCTCGGGTCTACTCTTCGTTCGTTGCGTCGCGGGGATTTGGTTCGTCGCGTCGCGGGCTCTATTCGTCGAGTCTCGGGATTTGTTCGTCTCGGGGTTCGTTGGCTTTGGTTTGTGGTCGTCGCGAGTTTCTGGTCTTTTGAAGAAGAGAAGACACCGCGACGATTTCTTGTCTCCGATCAACTTGTTAACAGAGAACGTAACCGCGATGTTTGCTTTGTTATTTTCCCATACGTCAGTGGTTAACTTAGGGAATAGTAATCTTCTCTTCTTCACTATACTTTCAGAAGCCATTGAAGTGAAGAACAAGTGCAGAGTCAGAAAATCTAGAGATTGTTTGCTGCTTTCTTCTGTGTTCCTGACTTCTGAATTTAGAATTATGTCGTACCTGATGAGAGAAAGCTCGGCAGCAATTGAAGGAACATCTAGAGCCTTTGTTCGAAGGATGGTGAGCCTTCCAAGAAGCATTGTAGGAGAATTTTCAAGAGTGATGGGGCAAGGAATAGACATTATGGGTCTAGGAAGGAGAAGACCAAACCAAAATATGCAACAAAACTTCGACTTTCCAAACCCACCAGTCCCTGTACCTGTTTCAGAAGAATGGGATTTTCTAGCGAAGTTTCAGCAGCAAAATGGCTGTCTTCATCCTTTCTTTTATGCTTGTTCTCTAATGGAGGTTCTCAAAATAGCAGAGAAGGAAAAGAAGTTCTTGTTCGTCTATCTTCACTCACCGGATCACCCTTTTACGCCGTCCTTCTGCAGAGATACGCTCTGTTCTGAGCTGGTCGTCCAGTTTCTGGACGCTAATTTCATTTCCTGGGGGGCTCTGGAAAGTAAAGGAGAGGGTCTTCTAATGGCTTCCATTTTAAAACCACCCTGCTTCCCTTTCTGCGCTGTGATTGTTCCTGCATCAGATCATAACATAACAGTAATACAACAGATGGAAGGGCCAATCCCTCCAGCTGAGATGGTGGAGATTCTGCAGACAACATTGGAGGAGCAAGGTTTGGCCTTTGGTAGCTTGAAGAAGAAGAATGGGGAGAAGATAAGAGCAGATAGAAGTTTAAGAGAAGAGCAAGATGTAGCTTATTTTAAAGCTCTTCACATTGATAAGCCAGAAAAAACCCAGGAAAAAGAAAAATCCAAGAAATCTTCTGCAGTGGAGAGGAGTAAAAAGGTAGAAGGAGCTTCAAACAAAGCAAAGAACCAGAAGTTGAAGAACAACCCAGCAAAAATTGAGCAAATCAAAGTGAAAGAAACAGTTTCTGCGACTCAAACTCCATACAAGGATCAAACGAAGGCTACCCAGATACTGATAAGGTTTCCTAATGGCGAAAGAAGAGAGCAGAGTTTTTCAAGCACAGACAAAGTGAATTCGATTTACCGATACATCGACTCGCTCCGATTAAACGGTTTCGAGAATTACAGATTGGTTTCGAGCTTCCCCAGAAGAGTTTATGGAGCTGGTGAGATGGGAATGTCTCTCCAAGATGCCTCCCTCCATCCCAGGGCAACTCTGTTTGTGGAGCTCCATTAA 1551 44.29 MEGTVRSGLLFVRCVAGIWFVASRALFVESRDLFVSGFVGFGLWSSRVSGLLKKRRHRDDFLSPINLLTENVTAMFALLFSHTSVVNLGNSNLLFFTILSEAIEVKNKCRVRKSRDCLLLSSVFLTSEFRIMSYLMRESSAAIEGTSRAFVRRMVSLPRSIVGEFSRVMGQGIDIMGLGRRRPNQNMQQNFDFPNPPVPVPVSEEWDFLAKFQQQNGCLHPFFYACSLMEVLKIAEKEKKFLFVYLHSPDHPFTPSFCRDTLCSELVVQFLDANFISWGALESKGEGLLMASILKPPCFPFCAVIVPASDHNITVIQQMEGPIPPAEMVEILQTTLEEQGLAFGSLKKKNGEKIRADRSLREEQDVAYFKALHIDKPEKTQEKEKSKKSSAVERSKKVEGASNKAKNQKLKNNPAKIEQIKVKETVSATQTPYKDQTKATQILIRFPNGERREQSFSSTDKVNSIYRYIDSLRLNGFENYRLVSSFPRRVYGAGEMGMSLQDASLHPRATLFVELH 516
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 6750357 6752426 + BLOR13640 Blo04g00728 59756

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo04g00728 516 SMART 45neu3 207 333 IPR006577 -
Blo04g00728 516 Gene3D Glutaredoxin 199 341 - -
Blo04g00728 516 SUPERFAMILY Thioredoxin-like 201 341 IPR036249 -
Blo04g00728 516 ProSiteProfiles UBX domain profile. 435 513 IPR001012 GO:0005515
Blo04g00728 516 MobiDBLite consensus disorder prediction 377 411 - -
Blo04g00728 516 CDD UBX 442 514 - -
Blo04g00728 516 SUPERFAMILY Ubiquitin-like 397 514 IPR029071 -
Blo04g00728 516 SMART ubx_3 432 515 IPR001012 GO:0005515
Blo04g00728 516 Pfam UBX domain 437 514 IPR001012 GO:0005515
Blo04g00728 516 Gene3D - 435 515 - -
Blo04g00728 516 PANTHER UBIQUITIN-ASSOCIATED (UBA) PROTEIN-RELATED 141 515 - -
Blo04g00728 516 MobiDBLite consensus disorder prediction 377 404 - -
Blo04g00728 516 CDD UAS 223 338 - -
Blo04g00728 516 PANTHER FAS-ASSOCIATED PROTEIN 141 515 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo04g00728 K18726 FAF2, UBXD8; FAS-associated factor 2 - qsu:111991498 423.705
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo02g01097 Blo-Chr2:41912902 Blo04g00728 Blo-Chr4:6750357 4.78E-12 dispersed
Blo03g00196 Blo-Chr3:4640054 Blo04g00728 Blo-Chr4:6750357 2.44E-14 dispersed
Blo04g00728 Blo-Chr4:6750357 Blo19g00155 Blo-Chr19:5961683 1.71E-66 dispersed
Blo04g00728 Blo-Chr4:6750357 Blo03g00816 Blo-Chr3:33566925 3.95E-68 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g788 Blo04g00728 . . . . . . . Cmo13g00906 . . . . . . Cpe20g00253 . . . . . . . . . . . . . . . Cone2ag0920 Cone16ag0087 . . Lsi02g00391 Csa01g00869 Chy12g01253 Cme12g01677 . . . . . Bpe15g00644 . . Sed02g1604 . . Cma13g00873 . Car13g00715 . . . Bhi08g01641 Tan05g1988 Cmetu09g0491 Lac10g0471 . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0013011 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 0 1 1 1 0 1 1 1 28
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo04g00728 Blo_Chr04 FPKM 2.262023 3.963187 2.225904 2.642879 1.673649 1.491037 1.105487 4.76165 3.813642 4.394202