Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo04g00729 ATGGCTTTTCGGCTTTCCCAGACTCTTCGTGTTCCGCTTCTCTCTCCTTGTTATTCTCTTAAGGCTCCCTCATTTCGTAGATTTACAGTTCAGAACAGCGTTTTAGAGCCTAGAGAGTCTCGTAAGCTTGTCTTGGAAGTAAAGGAGAAGCTTGAAAGAGAACATTTTACGCTTCCTGTAGGAAAAAATGGAAGAGATGATGAAGATATGATCCTGTGGTTTCTACAGGACCGCCAATTCGCTGTTGATGAAGCTGTTGCCAAATTGACCAAAGCAATTAAATGGCGTCATGAGTTTGGAGTACACAATTTGTCTGAAAATGCGGTGAAGGGTATAGCTCTAACAGGAAAGGCTTACGTGCATGAATCTTTTGACATCAATGATAGGCCAGTACTTATGGTTATGGCATCAAAACATTTTCCTGCTGTGCATGGTCCAGTTGAAAATGAGAGACTGTGTGTGTTTTTGATAGAGAAGGCTTTGAGAAAGCTTCCACCTGGACAGGGGGAAATTCTAGCAATAATTGATCTACGAGGCTTTGGAGCTGAGAATGCTGATCTCAAGTTCTTAACATTTATATTCGAAGTATTTTACTACTATTACCCAAAGCGGCTAGGCCAAGTACTTTTTGTGGAAGCTCCATTTGTTTTCAAACCTATCTGGCAGCTAGCCAAACCTCTATTGAAGTCATATGCTTCTCTGGTGAGATTTTGTTCTGTTGAGACTGTTAGAACGGAATATTTTACAGAAGCAACAGTGCCTGCTAGCTTCAGAGACTGA 780 41.41 MAFRLSQTLRVPLLSPCYSLKAPSFRRFTVQNSVLEPRESRKLVLEVKEKLEREHFTLPVGKNGRDDEDMILWFLQDRQFAVDEAVAKLTKAIKWRHEFGVHNLSENAVKGIALTGKAYVHESFDINDRPVLMVMASKHFPAVHGPVENERLCVFLIEKALRKLPPGQGEILAIIDLRGFGAENADLKFLTFIFEVFYYYYPKRLGQVLFVEAPFVFKPIWQLAKPLLKSYASLVRFCSVETVRTEYFTEATVPASFRD 259
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 6756070 6758612 + BLOR13641 Blo04g00729 59757

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo04g00729 259 Pfam CRAL/TRIO domain 115 249 IPR001251 -
Blo04g00729 259 ProSiteProfiles CRAL-TRIO lipid binding domain profile. 102 259 IPR001251 -
Blo04g00729 259 PANTHER SEC14P-LIKE PHOSPHATIDYLINOSITOL TRANSFER FAMILY PROTEIN 24 259 - -
Blo04g00729 259 SUPERFAMILY CRAL/TRIO N-terminal domain 41 107 IPR036273 -
Blo04g00729 259 SMART sec14_4 112 253 IPR001251 -
Blo04g00729 259 SUPERFAMILY CRAL/TRIO domain 110 247 IPR036865 -
Blo04g00729 259 Gene3D - 20 254 IPR036865 -
Blo04g00729 259 CDD SEC14 125 230 IPR001251 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo04g00729 - - - jre:108982338 374.4
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo04g00729 Blo-Chr4:6756070 Blo12g00698 Blo-Chr12:25246157 3.64E-17 dispersed
Blo04g00729 Blo-Chr4:6756070 Blo11g00042 Blo-Chr11:346172 5.20E-18 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g787 Blo04g00729 . . . . . . . . . Cma10g00117 Cma11g00086 Car10g00105 Car11g00078 Sed08g0100 . Cpe04g01567 Bhi02g00480 Tan09g2270 Cmetu02g0395 . Hepe09g0214 . . Cla06g01675 Cam06g1863 Cec06g1912 Cco06g1917 Clacu06g1818 Cmu06g1760 Cre06g2577 . . Cone13ag0153 Cone19ag0152 . . . . . . . Bda14g00804 . Bpe15g00643 Bma03g00777 . . Cmo10g00122 Cmo11g00087 . . . . . Cpe18g00850 . . . . . . . . . . . . . . . Csa01g00134 Chy02g02593 Cme02g01989
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003080 1 2 1 2 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 2 2 0 1 5 11 1 52
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo04g00729 Blo_Chr04 FPKM 172.321625 185.035126 170.944305 177.713028 215.46138 209.095352 212.854767 180.862518 184.077164 181.097305