Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo04g00750 ATGGTTTCTGAGGTCATATTTGCCATGGCTTTCACCACTGTATTGGTTGTAGTGATCTTCTTCTTGATCCTCTTAATCTTTGTTCTTCTTCGGGCAAATAAGGTTGATACGAGTTTTGAAAGAGAACATGCATCAAATCCTGCAGAAGTGAAGAAACTTGGAGGAGATTTGGGAGAGAAAAGTGTTGTTGACAACGAGCTGAACGTGATTTGTATCCGAAAAGACGATGACAAGTATTTTACGAGTTTTTCGAAGAATCCTAGCGATGTAGAGGAAGAGAAGGGCATGAAGAACAATGCAAAAGACTTGCAAAAGAAACTCAATCCTCCAGAATCTTTACGGCTATCCAATGAAACAGATCCCGTATCAGATTTTCAAGATCCTACTCCACCAATCGTTTTGGAAAAGAAAACTCAATCACAAATTACTGACCCACCACCAATTCAGATCGAGAAGATTCTTCCTCCGCCGCCACCTCTGCCGCTTTTCAGATCAAAAAACGCCACTTCAGGCTCGGCTGTGAAAACAGGCTTGGAGCTGAGAGTGAAAGTAAACAGCAAGAACAAGGCAGGTGGGCTGGAAGCGGAAAAGGTGAAGCTGAAGCGGTTGCACTGGGATAAAGTCACCTTGCCAATGGCTGATCATTCAGTAGTGTGGAATGAGATCCATGAAGATGGATCTTTGAGGTTTGATGATGATGAAATGGAGAATCTATTTGGATGTAACACTACCAACAATATGCTTCAATTTCCTGGAAAAAACAATCTCTTATCAAGTTCAGTCAATTCCAATACTGGCCTCAAATCTCGAGTTTTTCTGCTGGAACCTCGGAAGTCTCAAAATGTGGCAATAGTGTTAAGATCTATCGCCGTTTCTTGCGAAGAAATTCTCGATGCCCTCGTCAATGGCCACAGACTGGATTCAGATACCTTGGAGAAACTGACCAGAGTTTCTCCAACCCAAGAAGAAGAAATCAAGATCCTGCAATTTAACGGCGACCTGAATAAACTTGCAGATGCTGAATCTTTTCTCTATCAGATTCTTAGAGCCATTCCTTCTGCCTTTTCCTGTTTTAAGGCGATGCTTTTCCGAGACAATTACAATGCCGAAATTCTTCTTCTAAAAGAGTCTTTGCAGACAGTTGAATCGGGATGTAAAGAACTCAGAGCCAGCAAGCTCTTAGTTAAGCTTCTCGAAGCCATTCTCCGGGCTGGTAATCGAATGAATGCCGGAACTGCTAAAGGTAATGCTCAGGGATTCAATCTCAGCGCTCTGCAGAAGCTTTCAGATGTGAAAAGCAATGATGGAAAGACCACCCTTCTTCACTTTGTCGTTGAACAAGTAGCTCGATCTGAGGGAAGACGATGTCTGAAAAACCTTAACCGTAACCTCAGCCATCAAAGAACCCAAACTGGAGAACCCGAATCAGATAATCCTCTACCAGAAGAGATTAACAAAGAATATCTAAATCTAGGATTACTAATCTTGAGAGAGCTAAGAACGGAATTAACTAATGTGAAGAAAGCAGCTACCCTCGACTATAATAGTTTCATCAATTTGAGCTCCAATATCGAAGCTCCAGCCTTAGAAACCAGTGGACTCGTCAAGCAATGTGGCGATGGTGAGAGAAGTGGATTTGCGAGGGAAATGAAAGGGTTTATAGAGGAATGTGAAGAAGAACTAAAGATGGTTAGAGAAGAGCAGAGAAGGGTTATGGAATTAGTCAATAGAACATCAGAATATTTCCAAGCAGGGGCTTCACAGGATAAGAGAGCTCACCCGTTTCAGCTTTTCTGCATTGTGAGAGACTTTCTCGAACTAGTTGATCAAGCCTGCATATACATTGAACGGAAACAGAAGCATCCAAGTCCGAGAGTGATCGCTATCAACTCATCGCCTCCCCTCTCACCTTTGAAAAGAGCAGCAGTGAGATTCCCAGACTTTTATATACATCTAAAGTCATACATGTCAAGTACATCGAGTGATACCGATGATGATTTCTGA 2004 42.27 MVSEVIFAMAFTTVLVVVIFFLILLIFVLLRANKVDTSFEREHASNPAEVKKLGGDLGEKSVVDNELNVICIRKDDDKYFTSFSKNPSDVEEEKGMKNNAKDLQKKLNPPESLRLSNETDPVSDFQDPTPPIVLEKKTQSQITDPPPIQIEKILPPPPPLPLFRSKNATSGSAVKTGLELRVKVNSKNKAGGLEAEKVKLKRLHWDKVTLPMADHSVVWNEIHEDGSLRFDDDEMENLFGCNTTNNMLQFPGKNNLLSSSVNSNTGLKSRVFLLEPRKSQNVAIVLRSIAVSCEEILDALVNGHRLDSDTLEKLTRVSPTQEEEIKILQFNGDLNKLADAESFLYQILRAIPSAFSCFKAMLFRDNYNAEILLLKESLQTVESGCKELRASKLLVKLLEAILRAGNRMNAGTAKGNAQGFNLSALQKLSDVKSNDGKTTLLHFVVEQVARSEGRRCLKNLNRNLSHQRTQTGEPESDNPLPEEINKEYLNLGLLILRELRTELTNVKKAATLDYNSFINLSSNIEAPALETSGLVKQCGDGERSGFAREMKGFIEECEEELKMVREEQRRVMELVNRTSEYFQAGASQDKRAHPFQLFCIVRDFLELVDQACIYIERKQKHPSPRVIAINSSPPLSPLKRAAVRFPDFYIHLKSYMSSTSSDTDDDF 667
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 7068605 7070680 + BLOR13662 Blo04g00750 59778

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo04g00750 667 Coils Coil 547 574 - -
Blo04g00750 667 Pfam Formin Homology 2 Domain 195 608 IPR015425 -
Blo04g00750 667 PANTHER FORMIN-LIKE PROTEIN 117 662 - -
Blo04g00750 667 PANTHER FORMIN-LIKE PROTEIN 2 162 - -
Blo04g00750 667 PANTHER FORMIN-RELATED 117 662 IPR027643 GO:0003779|GO:0030036|GO:0045010|GO:0051015
Blo04g00750 667 PANTHER FORMIN-RELATED 2 162 IPR027643 GO:0003779|GO:0030036|GO:0045010|GO:0051015
Blo04g00750 667 Gene3D Formin, FH2 domain 214 625 IPR042201 -
Blo04g00750 667 MobiDBLite consensus disorder prediction 110 124 - -
Blo04g00750 667 SUPERFAMILY Formin homology 2 domain (FH2 domain) 203 619 - -
Blo04g00750 667 MobiDBLite consensus disorder prediction 101 129 - -
Blo04g00750 667 MobiDBLite consensus disorder prediction 461 476 - -
Blo04g00750 667 ProSiteProfiles Formin homology-2 (FH2) domain profile. 190 634 IPR015425 -
Blo04g00750 667 SMART it6_source 190 623 IPR015425 -
Blo04g00750 667 MobiDBLite consensus disorder prediction 461 482 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo04g00750 - - - qlo:115963900 533.102
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Blo04g00750 Blo15g00283 CCT
Blo04g00750 Blo15g00283 ECH
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo04g00750 Blo-Chr4:7068605 Blo11g00885 Blo-Chr11:17412692 6.07E-135 dispersed
Blo04g00750 Blo-Chr4:7068605 Blo04g01082 Blo-Chr4:16245411 6.53E-88 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g677 Blo04g00750 . Bda06g00573 . . . . . . . Cma10g00155 . Car10g00146 Car11g00117 Sed08g1374 . . Bhi02g00383 Tan09g2193 Cmetu04g3167 . Hepe09g0163 . . . . . . . . . . . . . . . . . . Blo15g00283 . Bda14g00829 Bpe07g00815 Bpe15g00622 Bma03g00803 . . Cmo10g00166 Cmo11g00124 . . . . . Cpe18g00822 . . . . . . . . . . . . . . . Csa01g00187 Chy02g02546 Cme02g01930
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0019307 1 0 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo04g00750 Blo_Chr04 FPKM 6.050343 4.783826 3.181837 4.141253 6.63607 5.850196 5.520075 6.22366 6.776744 5.484879