Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo04g00752 ATGATGACATTTGTGAGCTTTTCTTGCAAAGTTAACAAGATTGAGCCTGACGTTGGCACTTATAGCATACCAATACAAGTGTTTTGGGAGGGTGGATACCTAAAGGAGGTAGTAACATTGTTTCATGATATGGTTGAGGAAAATGTAGAGCCTCACATGGAGACATGTCTTGCTGATGAGAGTCAGGAGCAGTTACAAGAAATTAAGGCTTCAGGAGTATTACTCAGCGTGTTGAGCTACTGCTTGATGCTCGCTGTTTTTGCTAAGAATGGCAGGAAAGAAACCGCCGATGGTGATGGAGAAGTTGTCGACAGTGATGTAGAAACTGCCATTGATGGAAGAAACTGCTTGAAGCTGGAAATGAATGAGTTGGCAGCGAACAAAATGGAAACTGCAACAAAGGAGGGTGGAAATTGGTTGACAGATGGGGATGAGGTGTCATTGGAATCTGAAATTGCAAAGGAAGCTGGACAAAAATACCCCTTTATAGCAAAAGACACCAAATTTCTTAAATCTGATACTGCAAAGGAAGTTGGACAAAAATACCCTTTTTCAGCAAAATACACCAAATTTCTTCCAAAAGCCCAAATGTGTAGCAAAAGATTTTTTGGGCCAATTTCAATTCTGACCCATTTGGATTACAATAAAGGCGTGAAGACATATAACCTTTTACTTAAGGTCTTGGAGAAGTTTTTGAGAAAATTTAAAACATGGATTGAGAAAATTTTGTCCATTCATATCGCACCAACAACCCATCAAATGCCACTTGCTAGTTGCCATCCACCACCGTATATATTCGTTGGTGCGCCTCTCACGCTTTTTGCTGTTCGTCTCACACTCACCTCCCATTTGCTGTCTCTTTCTAGTTTCTTACGCACTCCGTCGCCGGTGGAAGTCATTGACGACGCCGAAGAGATGCCGAACACGAACGTCGTCGTCGACTCTGTCACCGACGGGGGTGAATTTGGCGGCGGAAGCGGTGACGGTACTAGAGAGATCATGCTGTTTGGGGTTAGAGTGGTTGTGGATTCAATGAGGAAGAGCGTGAGTATGAATAACCTGTCGCAGTACGAGCATCCTCACGAGGTCTCGAATTGCAAGGTTAGGAGCAGCAAAGGAAAAATTGAAGTTGCAGCTGGTTATGCGTCTGCAGAGGATGTCGTTCCGAGTTCGGACGGGAATCGCGAGCGGGAACGCAAGCGAGGAGTGCCGTGGACAGAGGAAGAGCACAAGCTATTTCTGTTGGGATTGCAGAAAGTAGGAAAAGGTGATTGGAGAGGAATCTCAAGGAATTTTGTGAAAACTAGAACGCCAACACAGGTGGCGAGCCACGCTCAGAAGTACTTCCTCCGTCAAACAAATCTTAATCGCCGTCGAAGGAGATCTAGCCTCTTTGATATCACCACTGAAACGGTGAAACCAATGCCAATGGAAGAAGAGGAAGCACAAGGTCGTGTCTCTCAATTGCATTCCTTGCCACCACCTCATTTAACTGAATCTAGCAGTACCACTGGATTCCCTATTTTTCCAACTTTTTCTCAAGCTGTTGGGCCAGCAACATTATCATTGCCAATTGAACACCCAATGGAGAAGCTAACAATAGGAGGAAGAAACCAAGCATGCGATGCATCTATGAAGTATCTCTGCCCACTTGATGTGAAAAATATTCCTGGTGCTACAAGTCTAGCCGATATCAACTTGAATTCCAAGTCAGCATTGCATCATTCAGCGCTCTCTCTCAATCTTTCCCTGCCATCAGACCTAAGTGACTCGTCATCAATACACTTATCTTTTCCAGATGTTTCAAGCTTCACCAGTGGTGGTGATAACACTATAACTGTTGCTTAA 1848 44.26 MMTFVSFSCKVNKIEPDVGTYSIPIQVFWEGGYLKEVVTLFHDMVEENVEPHMETCLADESQEQLQEIKASGVLLSVLSYCLMLAVFAKNGRKETADGDGEVVDSDVETAIDGRNCLKLEMNELAANKMETATKEGGNWLTDGDEVSLESEIAKEAGQKYPFIAKDTKFLKSDTAKEVGQKYPFSAKYTKFLPKAQMCSKRFFGPISILTHLDYNKGVKTYNLLLKVLEKFLRKFKTWIEKILSIHIAPTTHQMPLASCHPPPYIFVGAPLTLFAVRLTLTSHLLSLSSFLRTPSPVEVIDDAEEMPNTNVVVDSVTDGGEFGGGSGDGTREIMLFGVRVVVDSMRKSVSMNNLSQYEHPHEVSNCKVRSSKGKIEVAAGYASAEDVVPSSDGNRERERKRGVPWTEEEHKLFLLGLQKVGKGDWRGISRNFVKTRTPTQVASHAQKYFLRQTNLNRRRRRSSLFDITTETVKPMPMEEEEAQGRVSQLHSLPPPHLTESSSTTGFPIFPTFSQAVGPATLSLPIEHPMEKLTIGGRNQACDASMKYLCPLDVKNIPGATSLADINLNSKSALHHSALSLNLSLPSDLSDSSSIHLSFPDVSSFTSGGDNTITVA 615
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 7094119 7110105 + BLOR13664 Blo04g00752 59780

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo04g00752 615 ProSiteProfiles Myb-like domain profile. 397 449 IPR001005 -
Blo04g00752 615 PANTHER TRANSCRIPTIONAL ADAPTOR 2 ADA2 -RELATED 326 615 - -
Blo04g00752 615 SUPERFAMILY Homeodomain-like 399 454 IPR009057 -
Blo04g00752 615 PANTHER KIN2 326 615 - -
Blo04g00752 615 ProSiteProfiles SANT domain profile. 400 453 IPR017884 -
Blo04g00752 615 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 17 51 IPR002885 -
Blo04g00752 615 SMART sant 401 451 IPR001005 -
Blo04g00752 615 Gene3D - 403 455 - -
Blo04g00752 615 CDD SANT 404 449 IPR001005 -
Blo04g00752 615 Gene3D Tetratricopeptide repeat domain 7 159 IPR011990 GO:0005515
Blo04g00752 615 Pfam Myb-like DNA-binding domain 404 449 IPR001005 -
Blo04g00752 615 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 400 452 IPR006447 GO:0003677
Blo04g00752 615 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 397 453 IPR017930 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo04g00752 - - - qlo:115964004 289.271
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Blo04g00752 Blo13g00036 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo04g00752 Blo-Chr4:7094119 Blo05g00078 Blo-Chr5:772545 5.12E-39 dispersed
Blo11g00869 Blo-Chr11:16760254 Blo04g00752 Blo-Chr4:7094119 2.63E-30 dispersed
Blo01g00987 Blo-Chr1:27061644 Blo04g00752 Blo-Chr4:7094119 1.48E-30 transposed
Blo13g00036 Blo-Chr13:551486 Blo04g00752 Blo-Chr4:7094119 1.05E-78 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g672 Blo04g00752 . . Bda15g00706 Bpe12g00497 . . . . . . . . . Sed08g0179 . Cpe04g01530 Bhi02g00380 Tan09g2185 Cmetu02g0204 . Hepe09g0159 . . Cla06g01627 Cam06g1808 Cec06g1859 Cco06g1865 Clacu06g1768 Cmu06g1711 Cre06g2530 Cone2ag0877 . Cone13ag0104 . Lsi02g00340 Csa01g00811 . . Blo13g00036 . Bda11g01577 . Bpe07g00811 Bpe15g00619 . . . . . . . . . . Cpe18g00819 . . . . . . . . . . . . . . Lsi06g01508 . Chy02g02541 Cme02g01925
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005075 1 1 2 0 2 1 3 1 1 1 1 1 2 1 1 2 1 4 2 1 1 1 1 1 1 1 1 3 1 1 41
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
12297 PF00249 Myb_DNA-binding 7.00E-11 CL0123 Blo TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo04g00752 Blo_Chr04 FPKM 90.826797 97.740967 84.587715 81.274704 72.433464 70.985855 64.994896 122.084694 130.85228 110.140846