Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo04g00758 ATGCTTGCACTTGTTGAAGCAGAGAGAGTGTTTCTCCAGCCAAACTCGAGATTCCATGGATCAGTTTTGGAGTCGACAAAAGATAAAGAGGAAGAAGAGTGTGAGAAGAAAATTGTGGAAGATGAAGACAAAGCTCTGCAATTTTGCATCAGAAATGTTCATGTTGCAGGAATAAAGACAGAGTTAACTAAGAAGAACATGGCGGGTGGGAGAGTCTTCAATAGCGGTGGTGGCAGTGGCAGTGGCAGTGGCAGTGGCAGTGGTCCATCTGCTCTTTTGCTTAAGAATCAAGCTTCAAAGCCTCTCAATAATTTGCTGATTTCTGGGTCTTCCTCTTCTAGTTCTCCATCTTTTCAGAATCCAAGATCCATGGTGAATTTCAAAGATGGTGGAGGACGAAGTGCGTCAAATAGACTGACGTTCTGCCCATTTGACGAGAAAGAAAATGGGGAGGACGAACTGGATGAGTTCTATTATCACCAACCTGAAAAAAAGAGGCGTCTAACTGCTGGTCAAGTCCAGTTTCTGGAGAAAAGCTTTGAACTGGACAACAAGCTGGAGCCAGACAGAAAAACACAGCTGGCGAAAGAAATAAGCCTGCAGCCCCGTCAGGTTGCAATTTGGTTTCAGAACCGCCGCTCTCGCTGGAAGACGAAGCAACTGGAGAAGGATTTCGAGGTCTTACAATCCAATTATGATAGCCTAAAGGCTGATTATGAGAATCTCCTCAATGAAAAGGATAAGCTAAAGGCTGAGGTTCTTCTCCTCTCAGAAAAGCTTCTTCTCATAGAGAAAGAGAATGCAAACTCAGAACAATCTGAAGAACCACCACAGAGTAAAATGGAAAAAACACTTTCAAAGGATGAAGAAGACTCCAATGGCTTAAAACAAGGCTGTAAGATTGAAGATGTTAGTTCAGTCAAAAGTGATATATTTGATTCAGGCAAGTCTGATATATCAAACGAAGAAGAAGATAGCTTAGACAATAGCCTGTTTCCTTCATATATCTTCTCCAAGCTCAGAGATTTCGATTACTCTGACCCACCGACTAGCTCCTGCAGTTTCGGATTCCATGTCGAAGACACTGCTCTCTGGGGTGTGCACGGTACCGGTCCGGTCCGGTTTTACAGTGGTCCGGCACCAGACCAGCGGTACCGGTTCCCATTTTTGGAAGACCGGTACCGGTTCCGGTCTGGTTCTGGACCGGGGTTTACCGGTCCCGGTTCCGGTCCGAGTAGATTAGAGTGCTTACTGGCGACGGCTCGATGGACACTGGACAGAGCTCGGAGCTCGGAGCTGGCAGCGGCAGTTGCAGACGAACGGAGCTCGGAACTCGGAGCTCGGAGCTGGCAGTGGCGACTGGCGACGGTTGACGGACGAAGCTCGCCCGGTCCTACACGGTACCGGTTCTCTGGTACCGTGTACCGAGGACCGGTACCGTGCAGAACCGGTCCCGGTAGCACCAGACCGGATCCGGTCCAGTGCTCCACATATGCGGACCAATCCCGGTACCAGAAGGACCGGTTCCGGTCCGGTTCTCCGGTGCCTGGCCGGTTCTGCACACCCCTATATATCAGTGATTGGGGAGGGGGAAGTTGA 1599 49.22 MLALVEAERVFLQPNSRFHGSVLESTKDKEEEECEKKIVEDEDKALQFCIRNVHVAGIKTELTKKNMAGGRVFNSGGGSGSGSGSGSGPSALLLKNQASKPLNNLLISGSSSSSSPSFQNPRSMVNFKDGGGRSASNRLTFCPFDEKENGEDELDEFYYHQPEKKRRLTAGQVQFLEKSFELDNKLEPDRKTQLAKEISLQPRQVAIWFQNRRSRWKTKQLEKDFEVLQSNYDSLKADYENLLNEKDKLKAEVLLLSEKLLLIEKENANSEQSEEPPQSKMEKTLSKDEEDSNGLKQGCKIEDVSSVKSDIFDSGKSDISNEEEDSLDNSLFPSYIFSKLRDFDYSDPPTSSCSFGFHVEDTALWGVHGTGPVRFYSGPAPDQRYRFPFLEDRYRFRSGSGPGFTGPGSGPSRLECLLATARWTLDRARSSELAAAVADERSSELGARSWQWRLATVDGRSSPGPTRYRFSGTVYRGPVPCRTGPGSTRPDPVQCSTYADQSRYQKDRFRSGSPVPGRFCTPLYISDWGGGS 532
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 7188204 7194757 - BLOR13670 Blo04g00758 59786

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo04g00758 532 MobiDBLite consensus disorder prediction 76 124 - -
Blo04g00758 532 MobiDBLite consensus disorder prediction 267 299 - -
Blo04g00758 532 Pfam Homeodomain 164 217 IPR001356 GO:0003677
Blo04g00758 532 CDD homeodomain 164 220 IPR001356 GO:0003677
Blo04g00758 532 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT5-LIKE 99 365 - -
Blo04g00758 532 MobiDBLite consensus disorder prediction 481 500 - -
Blo04g00758 532 SUPERFAMILY Homeodomain-like 157 221 IPR009057 -
Blo04g00758 532 ProSitePatterns 'Homeobox' domain signature. 194 217 IPR017970 GO:0000981|GO:0006355
Blo04g00758 532 ProSiteProfiles 'Homeobox' domain profile. 159 219 IPR001356 GO:0003677
Blo04g00758 532 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 99 365 IPR045224 GO:0003700
Blo04g00758 532 Pfam Homeobox associated leucine zipper 219 260 IPR003106 GO:0006355|GO:0043565
Blo04g00758 532 SMART HOX_1 162 223 IPR001356 GO:0003677
Blo04g00758 532 MobiDBLite consensus disorder prediction 73 131 - -
Blo04g00758 532 Gene3D - 158 225 - -
Blo04g00758 532 MobiDBLite consensus disorder prediction 267 297 - -
Blo04g00758 532 Coils Coil 218 266 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo04g00758 - - - jre:108999210 310.457
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Blo04g00758 Blo16g00197 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo04g00758 Blo-Chr4:7188204 Blo11g00670 Blo-Chr11:7393266 1.96E-39 dispersed
Blo03g00686 Blo-Chr3:28815814 Blo04g00758 Blo-Chr4:7188204 7.09E-14 transposed
Blo03g00687 Blo-Chr3:28821586 Blo04g00758 Blo-Chr4:7188204 1.76E-13 transposed
Blo06g00378 Blo-Chr6:22337729 Blo04g00758 Blo-Chr4:7188204 4.62E-13 transposed
Blo01g00421 Blo-Chr1:4753880 Blo04g00758 Blo-Chr4:7188204 1.82E-34 wgd
Blo11g00762 Blo-Chr11:10558154 Blo04g00758 Blo-Chr4:7188204 1.27E-32 wgd
Blo16g00197 Blo-Chr16:4403153 Blo04g00758 Blo-Chr4:7188204 1.35E-134 wgd
Blo16g01135 Blo-Chr16:39868208 Blo04g00758 Blo-Chr4:7188204 8.91E-38 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g499 Blo04g00758 Blo16g00197 . . . Bpe13g00275 . . Cmo13g00956 Cmo18g00098 . . . . . Cpe20g00203 . . . . . . . . . . . . . . . . Cone16ag0147 . Cone19ag0090 Lsi02g00316 Csa01g00793 Chy12g01323 Cme12g01748 . . . Bda14g00838 . Bpe15g00614 Bma03g00813 . . . . Cma13g00928 Cma18g00128 Car13g00767 Car18g00118 Cpe09g01065 . Bhi08g01418 Tan05g2080 . Lac10g0375 . . . Cla01g01422 Cam01g1489 Cec04g1119 Cco01g1575 Clacu01g1513 Cmu01g1405 Cre01g1323 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003231 3 2 3 3 2 1 2 1 1 1 1 1 2 1 1 2 1 4 2 1 1 1 1 1 1 1 1 3 3 2 50
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
12298 PF00046 Homeodomain 7.00E-15 CL0123 Blo TF