Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo04g00761 ATGGGGAAGTCACCAGCAAAATGGATCAAAACGATGTTGTTAGGAAAGAAGTCTTCCAAATCTCATACTTCCAAAGGCAGAGAGAAATATACAAATGAGAAACAAGTGCTGGTTTCTGCCAAGGACTCGGAAGTTGATCCAGTTGTGGATGCTCCTGTGCTTTCACATTTAGCCATTGATAAAAGTGAAAGGAAGTTTGGAATAAACAACAACGAAGCTGCAAGTTTATCACATGAGAAATCCACTCGAAATCAAGATACAGAAATTCAAGGGTCAACATGTCAAGATGCACTTAATGATCATGACAAAATCAGCCGCGAGAAAGCAGCCACAAAAGCGCAGGCTGCTTTTAGGGGTTATCTGGCTCGTAGGGCATTCTGCGCCCTCAAAGGTATTATAAGGTTGCAGGCGCTTATTCGAGGACACCTGGTTAGAAGACAAGCTATTGCTACGCTGAATTGCATGCTGAGAATTGTGAAATTTCAAGCCATTATTCGGGGGATGATTGTGAGACACTCTGATGAAGTGCAAGGAAAATGCATAGTTGTTAAGCCTATGAACGAACAACCAATAGTTGATCCTGCTGAAGTTACCCTTTCAGCTCTCATGGCAAAGTTTTCAGCAAATATTTTTATTTTCAAGTTGGTTGCTTCATCTCCTACTCCAAAGCCTCTTCAACTCCATTATGATTCGGAGAATCAGAACTCTGTCTCTTGCTGGTTAGAACGCTGGTCTAAGACCCAATTCTGGAAACCACTTCCTCGGCCTAAAAAGATCACAGAACCGAAATCCCAGAAAAAGCAGATCAATGGTCAAATTTCAGAAGCACAATCTGTCAGATCGAAGCGCACAAGGAGACTTCCTGGGGCTAACAACGACAGTGCCTCTGCGCAAATGTCCTCTGAAATTGAGAAGCCCAAACGTAATCTAAGGAAATTTTCATCCCATCCAGTAGATCAGGTGCAAGATAATCCCCAAAGTGAGCTTGAAAAAGTTAAGCGTAGCTTAAGGAAGGTTCATAATACTGTAACAGATAACTCTGTACAAATAGAAGTTGAAACTGAAAAGCAAAAGGAGACTTTGGAAAAGAGTTCCATTGCTTCAGGTCGTGAGCTTTTCGAACGCAGTGTAAATAATTCTAATGAATGGATGAAAAAAGAGATACCGGTGACATCCAACGCTTCTAATGAAGAAATAGAGTCGGAGGCATTAGTGATGAAAGAGATTCCTGATGTAACATGTACTGATCAAGTTGTAGCAGATGTAAATCCTTCAACAGAGAACGATGTTAAAGATCAAATCACTCTTGAGGATGCTGTTGATTCGAAGGTTTTAAAAGCAAACTGTAGTAACGATGGGAATATTGCAGTCGTGAATGGGGAATCTAGCCACATGGAAGATTTGATGAATAGTGAGAATAAAAAATCTAGCAAAAAAGTTGCAACTCCGGCAAAGCTAGCAGAAAATGGGTTGCAAAATAGTCCCACCATACCAAGTTATATGGCGGCAACTGAATCTGCAAAGGCAAAACTGAGAGCGCAAGGATCACCCAGGTTTGGACATGAGACGGAAAAGAATAATATCGTCCGACGTCACTCTCTTCCATCTTCAACAAATGGAAAAATCAGCTCTCAATCTCCAAGAACGCAAAGGCTGGTTCAAGCCAGTGGCAAAGGTGGGCATAAAAGTGACAAGTCTCTTCTGGCTTCCAGAGACGGAAATGGTAACACAAGCAGAATGGAGAAGGTGAAGTTTGATAAAAATGGATTTGCAGGAGTTCAACACAAAGACTGGAATTTAGGTGGGTTTTTCTTGATGTGTTTATGCTTTATGTACTGA 1839 41.33 MGKSPAKWIKTMLLGKKSSKSHTSKGREKYTNEKQVLVSAKDSEVDPVVDAPVLSHLAIDKSERKFGINNNEAASLSHEKSTRNQDTEIQGSTCQDALNDHDKISREKAATKAQAAFRGYLARRAFCALKGIIRLQALIRGHLVRRQAIATLNCMLRIVKFQAIIRGMIVRHSDEVQGKCIVVKPMNEQPIVDPAEVTLSALMAKFSANIFIFKLVASSPTPKPLQLHYDSENQNSVSCWLERWSKTQFWKPLPRPKKITEPKSQKKQINGQISEAQSVRSKRTRRLPGANNDSASAQMSSEIEKPKRNLRKFSSHPVDQVQDNPQSELEKVKRSLRKVHNTVTDNSVQIEVETEKQKETLEKSSIASGRELFERSVNNSNEWMKKEIPVTSNASNEEIESEALVMKEIPDVTCTDQVVADVNPSTENDVKDQITLEDAVDSKVLKANCSNDGNIAVVNGESSHMEDLMNSENKKSSKKVATPAKLAENGLQNSPTIPSYMAATESAKAKLRAQGSPRFGHETEKNNIVRRHSLPSSTNGKISSQSPRTQRLVQASGKGGHKSDKSLLASRDGNGNTSRMEKVKFDKNGFAGVQHKDWNLGGFFLMCLCFMY 612
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 7241226 7244650 + BLOR13673 Blo04g00761 59789

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo04g00761 612 MobiDBLite consensus disorder prediction 314 333 - -
Blo04g00761 612 MobiDBLite consensus disorder prediction 515 529 - -
Blo04g00761 612 PANTHER IQ-DOMAIN 5-RELATED 1 571 - -
Blo04g00761 612 MobiDBLite consensus disorder prediction 265 303 - -
Blo04g00761 612 Gene3D - 102 153 - -
Blo04g00761 612 SMART iq_5 128 149 IPR000048 GO:0005515
Blo04g00761 612 SMART iq_5 105 127 IPR000048 GO:0005515
Blo04g00761 612 ProSiteProfiles IQ motif profile. 130 157 IPR000048 GO:0005515
Blo04g00761 612 ProSiteProfiles IQ motif profile. 106 134 IPR000048 GO:0005515
Blo04g00761 612 Pfam Protein of unknown function (DUF4005) 477 563 IPR025064 -
Blo04g00761 612 Pfam IQ calmodulin-binding motif 130 147 IPR000048 GO:0005515
Blo04g00761 612 Pfam IQ calmodulin-binding motif 107 126 IPR000048 GO:0005515
Blo04g00761 612 PANTHER PROTEIN IQ-DOMAIN 31 1 571 - -
Blo04g00761 612 MobiDBLite consensus disorder prediction 512 580 - -
Blo04g00761 612 MobiDBLite consensus disorder prediction 1 34 - -
Blo04g00761 612 MobiDBLite consensus disorder prediction 253 304 - -
Blo04g00761 612 MobiDBLite consensus disorder prediction 530 553 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo04g00761 - - - csv:101214198 613.994
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Blo04g00761 Blo16g00193 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo04g00761 Blo-Chr4:7241226 Blo12g00893 Blo-Chr12:27105352 3.47E-16 dispersed
Blo16g00193 Blo-Chr16:4327158 Blo04g00761 Blo-Chr4:7241226 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g521 Blo04g00761 Blo16g00193 . . . . . . Cmo13g00963 Cmo18g00095 . . . . . Cpe20g00197 . . . . . . . . . . . . . . . Cone2ag0858 Cone16ag0154 . . . Csa01g00786 . Cme12g01757 . . Bda11g01691 . . . . . Sed08g2583 . . Cma13g00933 Cma18g00123 Car13g00773 Car18g00113 Cpe09g01069 . Bhi08g01405 Tan05g2090 Cmetu12g0772 . . . . Cla01g01430 Cam01g1498 Cec01g1538 Cco01g1583 Clacu01g1521 Cmu01g1413 Cre01g1331 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008895 1 3 2 1 1 1 2 0 1 0 0 0 2 1 1 2 0 2 1 0 1 1 1 1 1 0 1 4 0 3 34
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo04g00761 Blo_Chr04 FPKM 13.747747 19.18734 8.359179 6.438377 12.07195 12.39584 8.478065 5.771154 5.521669 8.024972