Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo04g00778 ATGATAGTTAACGAGACTAATCCCGCCATTGGAGCAAGCTTGAGAGCCCGACAACAGCTCCTTTTCTCTCTTTTACACAGTTGCAGCACCGTTAAAAAACTCATTCAAATTCACTCTCAGATAATCACGAACGGGTTTACCCAGAAAAACTTCATTCTTGTCAAGCTTTTATCAATCTACGCTTCTTCTGGTTATCTACGACTCGCTCTCAGAGTTTTTGAAAATATCAACAACCCGAGTACCACTTGCTGGAATCAGATAATCAGAGGCCATGCTCGAAGCGAAACGCCGACGAAATCGATTGATTTGTACAACAAAATGGTAGCGGCGGAAGTTGAGGCAGACGGGTTTACTTTTTCGTTTCTTTTGAGTGCTTGTGCGAGATCAGGGTCTTTGAAAATAGGTGAAATGGTTCATTGTAGAGTTTTGATGAATGGGTATTATCATTCCAATGTGTTTGTTCGAACCAATTTGGTTAATTTGTACGCAAACAGTGAAGAAGATACAGGCATTGATAGTGCACGTAAGGCGTTTGACGAAGTGCCTGAAAGAAATGTTGTGACTTGGAATTCTCTGTTGGCCGGTTATGTCAGACAAGGCAATATCGGTGCCGTGGTGAGAACTTTTGACGACATGCCGGAGAAGAATATCCACTCGTGGACGATAATGGTCTCAGGGTGTGCTCAAAATGGCGAGTGTAAGCTAGCTCTATCATTCTTCCATCATATGAGAAGAGGTCGTTCGGGATTGGATCAGGTGGCGTTACTAGCAGGATTATCCGCTTGTGCTGAATTGGGAGACTTAAAGTTAGGAACTTGGATTCATTGGTATATAGAAATAACATGGGGAAGTAAAGAGAGGCCATTGTTGGTATCTTTGAGCAATGCCTTGATACACATGTATTCAAGTTGTGGTGTAATCGATGAAGCATACAAAATATTCAAAATGATGCGTCATCCAAGCACAGTTTCTTGGACCACCATTATCACGGGATTAGCAAAACAAGGGCGTGGCAAAGAAGCTCTTCGGGTATTTGACGAAATGTTGGGGTCCGATGAAATAAGCCCTGACGAGACAACTTTTATCGGAGTTCTCTTTGCATGTAGTCACGCAGGGTTAGTCGGTGAAGGTCGTCGAGTTTTTGAATGCATGAAGGAAAGATACAGAATTAGCCCGCAAATTGAGCATTATGGTTGTATGGTTGATCTCTTAAGCAGAGCTGGTTTATGGAGTGAAGTATCAAGGCTGACTGAAAGTATGCCCATGAAGCCGAACAATGCAATATGGGGAGCAATACTTGGTGGGTGTAGAATTCACAAAAACGACGAATTTGCATCCAACATTGCTAGAAATTTGGTTGTCGAGATGGATCATGGCCAAGTTGTTGGCAAACTTGCGCTCTTGGCCGATGTGTACGCAAAGGCTGAAAGGTGGCAAGACGTCGCTATTGTGAGAGAGAGAATTACGGACTTGAGAAAGCCACCAGGGCGAAGTTGGATACAAATTGATGGAGTTATTCATGATTTTATGGCTGGTGATTGGACCCATAAGGATGTAAGTTTAGTTTACGAGATGGTTGATGAGATAACCAGGCAATCCAAAGAGGAAAATTACGAGCTAAATATGGTAGAGAAGATTTTGGATGATTGTTGA 1653 42.65 MIVNETNPAIGASLRARQQLLFSLLHSCSTVKKLIQIHSQIITNGFTQKNFILVKLLSIYASSGYLRLALRVFENINNPSTTCWNQIIRGHARSETPTKSIDLYNKMVAAEVEADGFTFSFLLSACARSGSLKIGEMVHCRVLMNGYYHSNVFVRTNLVNLYANSEEDTGIDSARKAFDEVPERNVVTWNSLLAGYVRQGNIGAVVRTFDDMPEKNIHSWTIMVSGCAQNGECKLALSFFHHMRRGRSGLDQVALLAGLSACAELGDLKLGTWIHWYIEITWGSKERPLLVSLSNALIHMYSSCGVIDEAYKIFKMMRHPSTVSWTTIITGLAKQGRGKEALRVFDEMLGSDEISPDETTFIGVLFACSHAGLVGEGRRVFECMKERYRISPQIEHYGCMVDLLSRAGLWSEVSRLTESMPMKPNNAIWGAILGGCRIHKNDEFASNIARNLVVEMDHGQVVGKLALLADVYAKAERWQDVAIVRERITDLRKPPGRSWIQIDGVIHDFMAGDWTHKDVSLVYEMVDEITRQSKEENYELNMVEKILDDC 550
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 7691194 7692846 + BLOR13690 Blo04g00778 59806

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo04g00778 550 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 321 355 IPR002885 -
Blo04g00778 550 Gene3D Tetratricopeptide repeat domain 288 351 IPR011990 GO:0005515
Blo04g00778 550 Gene3D Tetratricopeptide repeat domain 352 546 IPR011990 GO:0005515
Blo04g00778 550 Pfam E motif 439 501 IPR046848 -
Blo04g00778 550 Gene3D Tetratricopeptide repeat domain 153 272 IPR011990 GO:0005515
Blo04g00778 550 PANTHER REPEAT-CONTAINING PROTEIN, PUTATIVE-RELATED 14 531 - -
Blo04g00778 550 Pfam PPR repeat 295 318 IPR002885 -
Blo04g00778 550 Pfam PPR repeat 219 245 IPR002885 -
Blo04g00778 550 Pfam PPR repeat 396 421 IPR002885 -
Blo04g00778 550 Gene3D Tetratricopeptide repeat domain 9 151 IPR011990 GO:0005515
Blo04g00778 550 TIGRFAM PPR: pentatricopeptide repeat domain 187 217 IPR002885 -
Blo04g00778 550 TIGRFAM PPR: pentatricopeptide repeat domain 218 245 IPR002885 -
Blo04g00778 550 TIGRFAM PPR: pentatricopeptide repeat domain 323 357 IPR002885 -
Blo04g00778 550 PANTHER OS09G0411600 PROTEIN 14 531 - -
Blo04g00778 550 Pfam PPR repeat family 320 368 IPR002885 -
Blo04g00778 550 Pfam PPR repeat family 184 217 IPR002885 -
Blo04g00778 550 Pfam PPR repeat family 79 128 IPR002885 -
Blo04g00778 550 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 185 219 IPR002885 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo04g00778 - - - vvi:100260292 684.485
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo04g00778 Blo-Chr4:7691194 Blo04g00902 Blo-Chr4:10597884 8.39E-123 dispersed
Blo04g00778 Blo-Chr4:7691194 Blo05g00799 Blo-Chr5:29309718 5.55E-114 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g580 Blo04g00778 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Lsi02g00087 . Chy12g01527 . . . . . . Bpe15g00596 . . . . . . . . . . . Bhi08g01140 . . . Hepe07g2495 . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0014193 0 1 1 0 1 0 1 1 1 1 0 1 1 0 1 1 1 2 0 0 1 1 1 1 1 0 1 1 1 1 23
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo04g00778 Blo_Chr04 FPKM 0.827501 0.611557 0.126657 0.0 0.916836 0.842671 0.940965 0.10799 0.158061 0.191924