Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo04g00786 ATGCACGGCCTAAAGCATTCTCCCTTTAAGCTTGGTAAACATAAAACAGCAGAACCTAAAAATTCTGTTTCTTCTCAGTCAAACCCTTTTGATTCAGATGATGATTTGAAGACAAAGCAGAATCATTCTTTGCCTAAGGCTCACTCCGACCCTGTCAAAACGAATCTAACTGTGAGCCCCAATCCTTTTGATGATGATCAAGGAAAGGGGGCTCCCCCACCTTCCAATTCACTTAGTTGGTCTACGAGGAACAAGTACAAGAACGATTTCCGTGATGAGGGAGGATTGGAGAACCAATCTGTCCAAGAGTTGGAGAATTATGCAGTCTACAAGGCTGAAGAAACTACAAATTCGGTCAATGGATGCCTAAAAATTGCTGAGGAGATTCGAGAGGATGCTACCAAAACTTTGGTAACTTTGCATCAACAGGGCGAACAAATTACCAGGACCCATATGGTTGCTGCCGACATTGATCATGATCTTAGTCGGCATATTATTTGTTCAACATGTAGAAGTTTTCCATGGATCAATATGCAGTTTTTCGCTGTTGTTTTATTATCTAGTCGTATTTTCATCTCTTTCAAAGGTGAGAAGCTTCTGGGCAACCTTGGGGGAATGTTTTCCAAGACCTGGAAACCAAAGAAAACTCGTGAGATAAAAGGCCCTGAAATGAGAAGAGATGATTTGACAAGTAGAAAAGGCAACCATTTGGAGCAGAGGGAGAAGTTGGGATTGAGTCATGGAAACAACGCAAGGTCCAGCTCTCGAACTCCATATCCTGAACCAACCGATTCCTACCAGAAAGTAGAGGTGGAAAAAATGAAGCAAGACGATGCACTATCGGATTTGAGCAATATATTAGGGGAGCTCAAGGAAATGGCAATCGACATGGGAAACGAAATCGAAACACAAAACGGGGCTTTGGACAAATTCTACGTCGAAACCGATGAAATAGGAAATCGCGTTAAAGACGCCAATCGACGCGGCCATCGTTTGCTCGGGAAGTAG 1008 42.96 MHGLKHSPFKLGKHKTAEPKNSVSSQSNPFDSDDDLKTKQNHSLPKAHSDPVKTNLTVSPNPFDDDQGKGAPPPSNSLSWSTRNKYKNDFRDEGGLENQSVQELENYAVYKAEETTNSVNGCLKIAEEIREDATKTLVTLHQQGEQITRTHMVAADIDHDLSRHIICSTCRSFPWINMQFFAVVLLSSRIFISFKGEKLLGNLGGMFSKTWKPKKTREIKGPEMRRDDLTSRKGNHLEQREKLGLSHGNNARSSSRTPYPEPTDSYQKVEVEKMKQDDALSDLSNILGELKEMAIDMGNEIETQNGALDKFYVETDEIGNRVKDANRRGHRLLGK 335
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 7804806 7806205 - BLOR13698 Blo04g00786 59814

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo04g00786 335 CDD SNARE_SNAP25N_23N_29N_SEC9N 106 163 IPR044766 GO:0005484|GO:0031201
Blo04g00786 335 SMART tSNARE_6 265 332 IPR000727 -
Blo04g00786 335 MobiDBLite consensus disorder prediction 214 245 - -
Blo04g00786 335 MobiDBLite consensus disorder prediction 246 262 - -
Blo04g00786 335 MobiDBLite consensus disorder prediction 32 46 - -
Blo04g00786 335 MobiDBLite consensus disorder prediction 1 82 - -
Blo04g00786 335 Gene3D - 95 164 - -
Blo04g00786 335 SUPERFAMILY SNARE fusion complex 99 163 - -
Blo04g00786 335 PANTHER TARGET SNARE COILED-COIL DOMAIN-CONTAINING PROTEIN-RELATED 195 335 - -
Blo04g00786 335 Gene3D - 267 334 - -
Blo04g00786 335 PANTHER SYNAPTOSOMAL ASSOCIATED PROTEIN 195 335 - -
Blo04g00786 335 PANTHER SYNAPTOSOMAL ASSOCIATED PROTEIN 13 163 - -
Blo04g00786 335 MobiDBLite consensus disorder prediction 47 62 - -
Blo04g00786 335 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 270 332 IPR000727 -
Blo04g00786 335 SUPERFAMILY SNARE fusion complex 269 333 - -
Blo04g00786 335 MobiDBLite consensus disorder prediction 214 263 - -
Blo04g00786 335 CDD SNARE_Qc 275 331 - -
Blo04g00786 335 PANTHER TARGET SNARE COILED-COIL DOMAIN-CONTAINING PROTEIN-RELATED 13 163 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo04g00786 K18211 SNAP25; synaptosomal-associated protein 25 - zju:107419164 384.8
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo11g00791 Blo-Chr11:12037944 Blo04g00786 Blo-Chr4:7804806 4.28E-102 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g617 Blo04g00786 . . . . . . . Cmo13g01138 . . . Car10g00205 . . . Cpe04g01473 . . . . . . . . . . . . . . . . . . . . . . . . . Bda14g00867 . . Bma03g00844 . . Cmo10g00232 . Cma13g01086 . Car13g00924 . . Cpe18g00772 . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001344 1 5 1 1 1 2 4 2 2 2 1 2 4 2 2 4 2 4 4 2 2 4 2 2 2 2 2 6 4 1 75
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo04g00786 Blo_Chr04 FPKM 23.827652 23.344574 20.705193 20.716867 8.551765 8.352223 7.78168 119.854248 126.425819 130.233505