Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo04g00806 ATGGCTCAAGATGCTTTTCAAAGTACTGAATCATCTCAAAGTGCTGAATCACCGCGACGGCGTTCTGGTCTCTTGCGAGACCAGGTCCAATTGGTTAAGAAAAAGGACTCAGACCGCTATGAGATCGTTCCAATCAAAGATTCCCTTTCGTTTGATAAAGGTTTTTACATTGTAATCCGAGCATGCCAATTCTTGGCCCAAAAGAATGAGGGGATAACATTTGTAGGAGTAGCAGGTCCCTCTGGAGCTGGGAAGACTGTGTTTACTGACAAGGTGCTCAATCTTATGCCAAGCATAGCTGTCATTACTATGGATAACTACAATGATGCTAGTCGTATCATTGATGGCAATTTTGATGACCCGCGCTTAGCGGATTATGACACCTTGCTTGAAAATATAAATGGGCTAAAAGCAGGGAAATCTGTTCAGGTTCCTCTTTACGATTTCAAGACTAGCTCTCGCATAGGTTACAGGACAGTTGAAGTCCCCAGTTCTCGAATTGTGATTATTGAGGGCATTTATGCTTTAAGTGAAAAATTGCGGCCTTTGCTCGATCTTCGTGTATCAATTACTGGTGGAGTTCACTTTGACCTTGTCAAACGTGTTTTACGTGATATTCAACGTGCAGGACAAGAACCTGAAGAAATAATTCATCAAATTTCAGAAACAGTATATCCTATGTACAAAGCATTCATTGAACCGGATCTTCAAACGGCGCACATAAAAATCACCAACAAGTTTAATCCATTTACAGGATTCCAAAATCCCACTTATATTTTGAAGTCAACAAAGGCAGTAACTGTGGATCAAATCAAGGCTGTTATTTTGGATGATCACAAAGAAACTACAGAGGAAACCTATGACATTTACCTTCTGCCTCCTGGCGAAGATCCTGAAGCATGTCAGTCATATCTGAGGATGAGGAACAGGGATGGCAAATACAATCTCATGTTTGAGTTTTTGTTTAAATATAATGCTATTCTACAAATAACTTGGCTGTTTCAGACTTGTAATATGCCTTTTCCTCCTTTATGTCATTTCTTAGTGCAAGGAAAAGATCGATCATACGTGAAACATATTGCGGAGCAGCTGGGTTTGGATGGCTTTTACATTCCGCGAACTTACATAGAACAAATTCAGCTGGAGAAACTTGTAAATGATGTTATGGCATTGCCAGATGATTTGAAAACAAAGCTCAGCATTGATGATGAAGTAGCTTCAAGTCCTAAAGAAGCGCTTTCCCGAGCTTCTGCAGATAGAAGAACAAAGTATCTCAAGAGTGGAATGTCACAATCATATTCAAATCAGAGGGATAGAAGCCTTCCCAAGCTGACAAAACTTGCTGTTAATAATAGAAGGTTTGATGGGAGAACCCTTGAATCACCTGTGACGCTCACAAACCAGGGGGTCATTAGTCAACTGTCGGAACAAATTTCAACACTCAATGAGAGAATGGATGAGTTTACGTCTCGTATTGAAGAGCTAAATTCCAAGTTTTCCAACAAAAGAGTTTCAGCCAGCCAACAGAACTTGGCTTTGCATTCTGATGCCTGCAATGGGTCAGGACCTAATTCATATTTTGTGTCAAATTTGAGCAATGGTTCATTGACTGGATCACTTATTCCCCATTCCTCATCTTTCTCTCAATTGGCCAAGGAGTCTGCTTTGGTGGACGAGATTCTGAACATTGCACGTTCCCAGCGGCAAATCATGCATCAAATCGATAGTATGAGCAATGTGCTTCGTGAATCTTCTGGCGAGAGGTTACGCCAAGGAAGAACCGGTGGAACAAGCAGAATAGCTGACCTCGACTCAGTCACTACCCCGCTTATTCTGACGCTGGCAATCGGTGGTGAATTTTTAACAGATGAGGAACTTGGACTGATCGAGGATTTTCCCGAAGTAGAAGAGCATACAGAGGGAAATATCGAATATGTCAATGATGGGTCAGCAGAATGA 1959 41.4 MAQDAFQSTESSQSAESPRRRSGLLRDQVQLVKKKDSDRYEIVPIKDSLSFDKGFYIVIRACQFLAQKNEGITFVGVAGPSGAGKTVFTDKVLNLMPSIAVITMDNYNDASRIIDGNFDDPRLADYDTLLENINGLKAGKSVQVPLYDFKTSSRIGYRTVEVPSSRIVIIEGIYALSEKLRPLLDLRVSITGGVHFDLVKRVLRDIQRAGQEPEEIIHQISETVYPMYKAFIEPDLQTAHIKITNKFNPFTGFQNPTYILKSTKAVTVDQIKAVILDDHKETTEETYDIYLLPPGEDPEACQSYLRMRNRDGKYNLMFEFLFKYNAILQITWLFQTCNMPFPPLCHFLVQGKDRSYVKHIAEQLGLDGFYIPRTYIEQIQLEKLVNDVMALPDDLKTKLSIDDEVASSPKEALSRASADRRTKYLKSGMSQSYSNQRDRSLPKLTKLAVNNRRFDGRTLESPVTLTNQGVISQLSEQISTLNERMDEFTSRIEELNSKFSNKRVSASQQNLALHSDACNGSGPNSYFVSNLSNGSLTGSLIPHSSSFSQLAKESALVDEILNIARSQRQIMHQIDSMSNVLRESSGERLRQGRTGGTSRIADLDSVTTPLILTLAIGGEFLTDEELGLIEDFPEVEEHTEGNIEYVNDGSAE 652
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 8374437 8381207 + BLOR13718 Blo04g00806 59834

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo04g00806 652 MobiDBLite consensus disorder prediction 1 24 - -
Blo04g00806 652 MobiDBLite consensus disorder prediction 1 19 - -
Blo04g00806 652 Pfam Phosphoribulokinase / Uridine kinase family 74 243 IPR006083 GO:0005524|GO:0016301
Blo04g00806 652 PANTHER URIDINE KINASE 348 619 - -
Blo04g00806 652 PANTHER URIDINE KINASE 12 314 - -
Blo04g00806 652 Coils Coil 471 498 - -
Blo04g00806 652 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 70 245 IPR027417 -
Blo04g00806 652 PANTHER URIDINE-CYTIDINE KINASE C-LIKE ISOFORM X1 348 619 - -
Blo04g00806 652 PANTHER URIDINE-CYTIDINE KINASE C-LIKE ISOFORM X1 12 314 - -
Blo04g00806 652 PRINTS Uridine kinase signature 72 89 - -
Blo04g00806 652 PRINTS Uridine kinase signature 139 154 - -
Blo04g00806 652 PRINTS Uridine kinase signature 195 205 - -
Blo04g00806 652 PRINTS Uridine kinase signature 231 244 - -
Blo04g00806 652 CDD UMPK_like 74 246 - -
Blo04g00806 652 Gene3D - 73 256 IPR027417 -
Blo04g00806 652 Pfam CYTH domain 275 319 IPR023577 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo04g00806 K00876 udk, UCK; uridine kinase [EC:2.7.1.48] - zju:107418915 957.592
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo03g00815 Blo-Chr3:33556799 Blo04g00806 Blo-Chr4:8374437 1.24E-14 dispersed
Blo04g00806 Blo-Chr4:8374437 Blo06g01026 Blo-Chr6:33583584 3.19E-37 dispersed
Blo03g00919 Blo-Chr3:35194576 Blo04g00806 Blo-Chr4:8374437 6.90E-08 transposed
Blo11g00813 Blo-Chr11:13377004 Blo04g00806 Blo-Chr4:8374437 0 wgd
Blo04g00806 Blo-Chr4:8374437 Blo06g00946 Blo-Chr6:32688919 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g403 Blo04g00806 . . . . . . . . . Cma10g00269 Cma11g00239 Car10g00252 Car11g00218 . . Cpe04g01432 Bhi02g00041 Tan09g1983 . . . . . . . . . . . . . . . Cone19ag0022 . . . . . . . Bda14g00899 . Bpe15g00559 Bma03g00874 . . Cmo10g00287 Cmo11g00243 . . . . . Cpe18g00728 . . . . . . . . . . . . . . Lsi06g01374 Csa01g00316 . Cme02g01792
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001604 2 5 3 2 2 1 4 1 1 1 1 1 4 2 2 4 1 3 4 1 2 2 3 2 2 2 2 5 4 2 71
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo04g00806 Blo_Chr04 FPKM 34.359192 33.709942 0.2505 0.167878 2.26796 3.054491 2.544913 1.116864 1.075535 1.064497