Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo04g00812 ATGAACCGGGCCGTTAAGTTAAAGACACGCAATCCCACAATTGGAGACGCGCAGTTTGCAGCGCGTGCTGCCAACGAATCGACGTGCGTTCGGAAGGAAGACTTTCTTTGCCCTAATCGCCTGCGAGCGGGAGCCGTCTCTCTTATCCAGAAAAAAACCTCTTCGATCCCATTCCCTGATATATCTTCAACTATCAGCCATGTCCCTCAATTTCCTCTTCCTTCTCCTCATCTTCCTCCAGCTGGGATCCTCCATCGGAGTTATTTTACTGTAGTTGTTCTAATGGTTTGTTTACCCGATCTACTTAAATCAGCAACAATGACCAAAATTATCAAGGAAATGCTCCCAGCTGATGTGCGTGTTGCAAGGGATGCTCAAGATCTTCTGATCGAGTGTTGTGTAGAGTTCATAAATCTTGTATCGTCGGAGTCAAATGAAGTTTGTAACAGAGAAGAGAGACGAACCATCGCACCTGAGCATGTGCTCAAGGCTTTGGAGGTGCTTGGGTTTGGCGATTACATTGAAGAAGTCTTTGCAGCTTATGAACAACACAAGCTTGAAACAATGCAAGACTCCTCCAAAAGTAGTGGGAAGTGGAGCAATGGAGCCAAAATGTCAGAGGAAGAAGCATTGGCCGAGCAGCAGAGAATGTTTGCCGAGGCACGTGCAAGAATGAATGGCGGTGTTGCATCTGAAAAGCCTGAGTCAAACCAAAGTTTAGAGAGCTAA 729 46.36 MNRAVKLKTRNPTIGDAQFAARAANESTCVRKEDFLCPNRLRAGAVSLIQKKTSSIPFPDISSTISHVPQFPLPSPHLPPAGILHRSYFTVVVLMVCLPDLLKSATMTKIIKEMLPADVRVARDAQDLLIECCVEFINLVSSESNEVCNREERRTIAPEHVLKALEVLGFGDYIEEVFAAYEQHKLETMQDSSKSSGKWSNGAKMSEEEALAEQQRMFAEARARMNGGVASEKPESNQSLES 242
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 8423345 8426382 + BLOR13724 Blo04g00812 59840

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo04g00812 242 SUPERFAMILY Histone-fold 103 229 IPR009072 GO:0046982
Blo04g00812 242 Coils Coil 204 224 - -
Blo04g00812 242 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 104 165 IPR003958 -
Blo04g00812 242 Gene3D Histone, subunit A 100 230 IPR009072 GO:0046982
Blo04g00812 242 PANTHER PROTEIN DR1 HOMOLOG 102 239 IPR044255 -
Blo04g00812 242 MobiDBLite consensus disorder prediction 190 242 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo04g00812 K21751 DR1, NC2-beta; down-regulator of transcription 1 - gmx:100807912 241.121
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo04g00812 Blo-Chr4:8423345 Blo10g00864 Blo-Chr10:27339437 6.28E-17 dispersed
Blo16g00147 Blo-Chr16:3246930 Blo04g00812 Blo-Chr4:8423345 4.01E-78 wgd
Blo04g00812 Blo-Chr4:8423345 Blo06g01194 Blo-Chr6:35462669 5.62E-73 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Blo16g00147 . 1 148 CCAAT-DR1 Transcription Factor Family AT5G08190 79.7 4.0e-59 224.6
Blo06g01194 . 39 214 CCAAT-DR1 Transcription Factor Family AT5G08190 71.0 6.8e-59 223.8
Blo04g00812 . 102 235 CCAAT-DR1 Transcription Factor Family AT5G08190 79.9 8.6e-54 206.8
Blo06g01194 . 39 217 CCAAT-DR1 Transcription Factor Family AT5G23090 70.7 9.9e-63 236.5
Blo16g00147 . 1 149 CCAAT-DR1 Transcription Factor Family AT5G23090 78.5 6.6e-59 223.8
Blo04g00812 . 102 235 CCAAT-DR1 Transcription Factor Family AT5G23090 81.3 1.5e-55 212.6
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004258 4 2 3 2 2 1 2 1 1 1 1 1 2 1 1 2 1 2 0 1 1 1 1 1 1 1 0 3 2 1 43
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
12304 PF00808 CBFD_NFYB_HMF 1.70E-19 CL0012 Blo TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo04g00812 Blo_Chr04 FPKM 63.721813 67.246834 42.885948 40.661579 67.798981 82.34671 63.381302 39.293365 38.770187 36.813499