Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo04g00823 ATGATCAACGGAAGCTTGGGTGAAGAGCTTCGTAGACTTATTGATCGGAGATGGCAACCGTGTGCGAAGGCTAGTCGACGGAGAAGTAGAGGCGACCGATTGTTTTCTTTGTGTACGACATACCAACGAGTGAATAGCAGAACTAGATGGCGTGGCAAAGGCTCTGACGAGCTTGAAGACTTCGAGTCGATACTTGAGGCTACTGCTCCTTCAGTTAAAAGGAGAGATCGCGGTCAAGGCGGTGGAAATAGGAAGAGCGTTTTAATCGCTAAAGAGGCTATAGAGTTTCTCAACCATTTGACGACGGAAAAGCCTCTTTTTCCATTTGTCATTCCACTGGTTCTGCTTGCTTGGGGTTTTGAGAGATGGATTTTCCCTTTTTCGAATTGGGTTCCTCTTGCTTTGGCTATTTGGGCTACGATGCAGTACGGAACATATCAACGTCAAATTGTTGTTGATGACTTAAACAAAAAATGGAAGCGAATAATTGCAAACTCCGCGATGACAACCCCATTAGAGCCTTGTGAATGGTTGAACAAGCTTTTAATGCAGGTCTGGACGAATCACTTTAACCCCAAACTTTCACACAGATTTTCGTCCATTGTTGAGAAACAGTTAAAGCACCGAAGACCGATGCTCCTAGAAAAAGTTGAACTGCAGGAGTTTTCTCTCGGTTCATGCCCTCCTTGCCTGGGTTTGAATGGAACTAGATGGTCATCTTCTGGTGATCAGCTGCTAATGATGTTGCTTTTTCCCTTGGATAATACCAGAAAAGGTGTTTTGAAGTGTTATGTTAAAAGTTCTTTGTGTACGCCATGTTTGAGAATTAAAGCTTCAAATGTTGTCATTTTTTGCTCATCAAAAATTATGCAAATTGGTTTTGATTGGGATACGAATGAAATGAGCATCCTTTTACAAGCTAAGCTGGCCAAACCGTTTATGGGAACTGCAAGGATAGTTATAAACAGTCTTCAGATAAAGGGCGAGCTTCTTTTGATGCCTATTTTGGATGGAAGAGCAATTCTTTATTCATTTATGTCAATTCCTGATGTAAGACTAGGAGTTGCTTTTGGGAGTGGCGGAAGTCAAACATTACCAGCAACAGAGCTCCCTGGCGTTTCTTCTTGGCTGGATAAACTTTTTACCGATACCTTAGTCAAGACAATGGTTGAACCTCGTCGCCGTTGTTTCTCTTTGCCAGCTGTAGACTTGAGAAAAAAAGCTGTTGGTGGTATCATATACGTAACAGTTGTTTCAGCCAATAAACTTTTCAAGAATAGCTTGAGAGGAAGCCCATCGAGTAAGCTACATAGCTATTCTATGAATGGTTTAGCTGACAGCCATGGGCATGGGAGCTTTGGTGAAAAAGACTTGAATACATTTGTTGAGGTTGAGCTTGAAAAACTTAGTAGAAAAACCAACAGACGATCTGGCTCAAATCCTACTTGGGATTCAACGTTTAATATGATTTTACATGGCAACACGGGAATTCTTCGATTCAACCTTTATGAGAGCAATCCAAATCACATGAAGTATGATTATCTTGCGAGTTGTGAGATTAAGGTTAAGTATGATGCAGATGATTCCACAACATTTTGGGCTATAGGACCTGACTGTTCTGTGATAGCCAAGCATGCTGAGTTTTGTGGCAAAGAAGTTGAAATGGTTGTTCCATTTGAAGGGGTCAATTCTGGAGATTTGACAGTAAGGCTTGTCTTAAAAGAATGGCAATTCAGTGACGGTTCACACAGCTCAAACCATTCACAAGGAGGGTCACAGAAACCATTCTATAAATCATCGAAATTACTCGCAAAAACTGGCAGAAAAATTAATATATCTCTTGTTGAAGGAAAGGATCTCGTTTCTAGATCAGGGAAATGTGACCCATATGTTAAATTGCAGTATGGAAAGGCTCTCCAAAGAACGAGAACAGCCCATTCTTTCAATCCATTCTGGAATCAGAAGTTTGAATTTGATGAGGTAGGAGACGGTGAATACCTCAAGATAAAATGCCTCAGTGAAGATACTTTTGGAGATGATAATATTGGCAGTGCCAGAGTCAACTTAGAAGGATTGACGGAAGGATCAATCAGGGACGTTTGGATCCCCCTTGAAAATGTCTCATCGGGAGAATTAAGACTTCAAATAGAAGCTGTATATGTTGATGACAATGAAGGATCAAAGGCTCAGGGCTCAACTTTAGGTTCAAGCAATCGATGGATAGAACTCGTTCTCCTCGAAGCAAGAGACCTTATAGCGGCCGATCTTAGAGGAACGAGCGATCCATACGTAAGAGTACATTACGGAGACTTGAAGAAAAGAACTAAGGTTATGTACAAAACATTGAATCCAAAGTGGAATCAAACGTTAGAATTTCCGGACGACAGTAGTCCATTGATATTGCATGTAAAAGATCACAACGCCTTGTTACCCACGTCTAGTATCGGCGATTGCGTAGTTGAATATCAAGGTTTGCCTCCTAACCAAATTTTTGACAAGTGGATACCCCTCCAAGGTGTCAAAAGGGGAGAGCTTCACATTCGAATCACGAGAAAAGTTCCAGAGCTTGAGCTTAGAACTAGTTTGGAGTCCAGACCCAGCCTGGATTCAGAGTTTTCATTGGACAAAGCACATCAGATTTCAGATCAGATGAAACAAACAATGAACAAGTTTCAAACATTGATAGAAGACGGAAATCTTGAAGGACTATCGACGGCTTTGAGTGAGCTGGAGAGTCTGGAAGATCTGCAAGAAGATTATATGTTGCAGCTTGAAACTGAGCAAATGCTTCTTGTCAACAAGATCAAGGAACTTGGGCAGGAGATTCTTAACTCCTCCCCGACTACTCCCTTTGCCGGAAAATCTCACAGTTGGAAGTGA 2880 41.53 MINGSLGEELRRLIDRRWQPCAKASRRRSRGDRLFSLCTTYQRVNSRTRWRGKGSDELEDFESILEATAPSVKRRDRGQGGGNRKSVLIAKEAIEFLNHLTTEKPLFPFVIPLVLLAWGFERWIFPFSNWVPLALAIWATMQYGTYQRQIVVDDLNKKWKRIIANSAMTTPLEPCEWLNKLLMQVWTNHFNPKLSHRFSSIVEKQLKHRRPMLLEKVELQEFSLGSCPPCLGLNGTRWSSSGDQLLMMLLFPLDNTRKGVLKCYVKSSLCTPCLRIKASNVVIFCSSKIMQIGFDWDTNEMSILLQAKLAKPFMGTARIVINSLQIKGELLLMPILDGRAILYSFMSIPDVRLGVAFGSGGSQTLPATELPGVSSWLDKLFTDTLVKTMVEPRRRCFSLPAVDLRKKAVGGIIYVTVVSANKLFKNSLRGSPSSKLHSYSMNGLADSHGHGSFGEKDLNTFVEVELEKLSRKTNRRSGSNPTWDSTFNMILHGNTGILRFNLYESNPNHMKYDYLASCEIKVKYDADDSTTFWAIGPDCSVIAKHAEFCGKEVEMVVPFEGVNSGDLTVRLVLKEWQFSDGSHSSNHSQGGSQKPFYKSSKLLAKTGRKINISLVEGKDLVSRSGKCDPYVKLQYGKALQRTRTAHSFNPFWNQKFEFDEVGDGEYLKIKCLSEDTFGDDNIGSARVNLEGLTEGSIRDVWIPLENVSSGELRLQIEAVYVDDNEGSKAQGSTLGSSNRWIELVLLEARDLIAADLRGTSDPYVRVHYGDLKKRTKVMYKTLNPKWNQTLEFPDDSSPLILHVKDHNALLPTSSIGDCVVEYQGLPPNQIFDKWIPLQGVKRGELHIRITRKVPELELRTSLESRPSLDSEFSLDKAHQISDQMKQTMNKFQTLIEDGNLEGLSTALSELESLEDLQEDYMLQLETEQMLLVNKIKELGQEILNSSPTTPFAGKSHSWK 959
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 8647564 8667093 - BLOR13735 Blo04g00823 59851

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo04g00823 959 PANTHER OS01G0128800 PROTEIN 91 271 - -
Blo04g00823 959 PANTHER OS01G0128800 PROTEIN 270 949 - -
Blo04g00823 959 ProSiteProfiles Synaptotagmin-like mitochondrial lipid-binding proteins (SMP) domain profile. 168 400 IPR031468 GO:0008289
Blo04g00823 959 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 738 850 IPR035892 -
Blo04g00823 959 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 404 524 IPR035892 -
Blo04g00823 959 ProSiteProfiles C2 domain profile. 588 702 IPR000008 -
Blo04g00823 959 Gene3D C2 domain 410 538 IPR035892 -
Blo04g00823 959 Gene3D C2 domain 597 721 IPR035892 -
Blo04g00823 959 Gene3D C2 domain 725 852 IPR035892 -
Blo04g00823 959 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 610 717 IPR035892 -
Blo04g00823 959 PANTHER PLANT SYNAPTOTAGMIN 91 271 - -
Blo04g00823 959 PANTHER PLANT SYNAPTOTAGMIN 270 949 - -
Blo04g00823 959 CDD C2 741 837 - -
Blo04g00823 959 SMART C2_3c 412 534 IPR000008 -
Blo04g00823 959 SMART C2_3c 609 701 IPR000008 -
Blo04g00823 959 SMART C2_3c 745 834 IPR000008 -
Blo04g00823 959 ProSiteProfiles C2 domain profile. 722 835 IPR000008 -
Blo04g00823 959 CDD C2 413 529 - -
Blo04g00823 959 Pfam C2 domain 742 837 IPR000008 -
Blo04g00823 959 Pfam C2 domain 412 524 IPR000008 -
Blo04g00823 959 Pfam C2 domain 610 704 IPR000008 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo04g00823 - - - csv:101213500 1220.3
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Blo04g00823 Blo15g00070 CCT
Blo04g00823 Blo15g00070 ECH
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo04g00823 Blo-Chr4:8647564 Blo01g00613 Blo-Chr1:6772530 2.86E-11 dispersed
Blo15g00070 Blo-Chr15:589887 Blo04g00823 Blo-Chr4:8647564 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g316 Blo04g00823 . Bda06g00806 . . . . . Cmo13g01065 Cmo18g00035 . Cma11g00273 Car10g00217 Car11g00249 . Cpe20g00121 . . . . . . . . . . . . . . . . . Cone13ag0280 . Lsi02g00181 Csa01g00664 Chy12g01439 Cme12g01877 . Blo15g00070 . Bda14g00929 . Bpe15g00523 Bma03g00894 . Sed08g2181 Cmo10g00245 Cmo11g00278 Cma13g01024 Cma18g00042 Car13g00859 Car18g00036 Cpe09g01138 . Bhi08g01232 Tan05g2269 Cmetu12g1130 Lac10g0236 Hepe07g2393 . . Cla04g01093 Cam04g1144 Cec01g1654 Cco01g1703 Clacu04g1172 Cmu04g1153 Cre01g1448 . Csa01g00387 . Cme02g01738
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002821 1 3 2 1 1 1 4 1 2 1 1 2 3 2 2 3 2 1 2 1 2 2 2 2 2 1 2 3 2 2 56
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo04g00823 Blo_Chr04 FPKM 13.976783 12.326058 18.361637 17.412271 59.422844 61.275772 61.140873 9.726406 9.753494 8.564841