Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo04g00834 ATGAATGGTCGCACTAATGGGCAGAGATTAGGAATCACTGATCCCATTTCACTTGGTGGCCCGACAGAGTATGATGTAATAAAGACTCGAGAACTTGAAAAGTATTTGCAAGATGTTGGATTGTATGAAAGTCAGGAAGAAGCTGTTAGTAGAGAAGAAGTTCTTGGCCGCCTAGACCAGATTGTGAAGATTTGGGTTAAAGCAATTAGTCGGGCCAAGGGATTGAATGAGCAGCTTGTGCAAGAAGCAAATGCTAAGATTTTCACATTTGGTTCTTATCGACTAGGGGTACATGGCCCTGGTGCTGATATTGACACTCTTTGTGTGGGACCCAGACATGCAACACGTGAAGAAGATTTCTTTGGCGAGCTGCATAAGATGCTCTCAGAGATGCCTGAAGTAACTGAGGTGCATCCAGTACCAGATGCTCATGTTCCTGTGTTGAGATTCAAGTTCGGTGGTGTCTCCATTGATCTTCTCTATGCAAAATTATCACTTTGGGTTATTCCTGAAGACTTGGATATTTCTCAAGACTCGATACTCCAGAATGCTGATGAGCAGACAGTTCGAAGTCTGAACGGATGTAGAGTTACAGACCAAATTCTGCGATTGGTTCCAAACATTCAGAATTTCCGCACAACATTGAGATGCATGAGGTTTTGGGCAAAACGACGAGGTGTTTATTCAAATGTTGCGGGGTTTCTTGGTGGCATAAACTGGGCGCTTCTTGTTGCTCGAATCTGCCAACTTTATCCCAACGCATTGCCCAATATGCTAGTGTCCCGGTTCTTCAGAGTTTTTACTCAGTGGCGCTGGCCAAATCCGGTCATGCTTTGTGCTATTGAAGAAGGATCACTAGGCCTTCAAGTGTGGGATCCCAGGCGTAATCCGAAAGACAGGTATCACAAGATGCCTATAATTACTCCAGCTTATCCTTGTATGAACTCTAGCTACAATGTTTCCTCAAGTACTCTGCAAATCATGCTAGAGGAGTTTCAGAGGGGACATGAAATATGTGAGGCTGTGGAGTCGAACATGGCTGATTGGGATACCCTTTTTGAGCGTTACGCCTTCTTTGAAGCTTATAAGAACTACTTGCAGATAGACATATGTGCAGAAAATGCAGATGATCTCAGACAATGGAAAGGTTGGGTTGAATCTCGCCTCCGCCAGTTAACATTAAAGATTGAGAAGCATACTTATAACTTGCTTCAGTGTCATCCACATCCTGGCGATTTTACAGACAAAACTAGACCTTTCCATTGCAGTTACTTCATGGGTTTGCAAAGAAAACAAGGAGTTCCTGGTAATGAAGGTGAACAATTTGATATACGTTTAACAGTTGAAGAGTTCAAGCATTTTGTCAATATATACACATTCCGGAAACCAGGAATGGAGATCCGTGTAACTCATGTTAAAAGGAGAAACATACCAAACTTTGTATTTCCTGGTGGGGTTCGTCCTTCTCGTCCATCAAAAGTTACTTGGGATGTCAAGCGAAGTGCAGAAAACAAGTTATCTGATGAGGGAAAGAAGCGAAAACGGGTTGATGATGTCCTGTCATATGAAGCTAAAGAAACTTTAGATGTTGCAGAAGGTAGAGAGAAGATAAAACGAGCCGATGATGATGTAGATGATGGCTTGAAAAAGAAATGTAAAACTCTGGTGCCTCTTACGGAGGTTTTACCTGAGGCTTGTCCTGTCAGCACGTCTAGATCATGTTCAGTGAAGTCTGATAGTGGTGTATGTGCAACATTATGCGAACTTTTTCAGAATGGGCCAGCAAATGAGTCACTCAATTGGAGTTTGTCTACAAAAACTTTAGCTGCTGCCGCTGAGTCTTCGAATTTGGAAGAAGTGGAGAAGATATTGTCAGGTCCGTGTGAATCCCGCCAAACGTTTCTGCAAGAACTCAATGAGCTTGAAGATGAAGATCGAAATAAAGTCAAAGATTATGAGACAAATATGAATGGGAGCAGCCTAATCGAGGTTTCAGCAGAAAATGCTTTGGTAGTTGCAGCGGTAACTTCTTGCAATGAAGCTGGCCCGTCCTCTATTTCATTCAACAATGAAAGCTTAGAGGAGCTTGAGGTTGAATATCCTTATCTTGAAACTTAG 2118 42.54 MNGRTNGQRLGITDPISLGGPTEYDVIKTRELEKYLQDVGLYESQEEAVSREEVLGRLDQIVKIWVKAISRAKGLNEQLVQEANAKIFTFGSYRLGVHGPGADIDTLCVGPRHATREEDFFGELHKMLSEMPEVTEVHPVPDAHVPVLRFKFGGVSIDLLYAKLSLWVIPEDLDISQDSILQNADEQTVRSLNGCRVTDQILRLVPNIQNFRTTLRCMRFWAKRRGVYSNVAGFLGGINWALLVARICQLYPNALPNMLVSRFFRVFTQWRWPNPVMLCAIEEGSLGLQVWDPRRNPKDRYHKMPIITPAYPCMNSSYNVSSSTLQIMLEEFQRGHEICEAVESNMADWDTLFERYAFFEAYKNYLQIDICAENADDLRQWKGWVESRLRQLTLKIEKHTYNLLQCHPHPGDFTDKTRPFHCSYFMGLQRKQGVPGNEGEQFDIRLTVEEFKHFVNIYTFRKPGMEIRVTHVKRRNIPNFVFPGGVRPSRPSKVTWDVKRSAENKLSDEGKKRKRVDDVLSYEAKETLDVAEGREKIKRADDDVDDGLKKKCKTLVPLTEVLPEACPVSTSRSCSVKSDSGVCATLCELFQNGPANESLNWSLSTKTLAAAAESSNLEEVEKILSGPCESRQTFLQELNELEDEDRNKVKDYETNMNGSSLIEVSAENALVVAAVTSCNEAGPSSISFNNESLEELEVEYPYLET 705
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 8953881 8958838 - BLOR13746 Blo04g00834 59862

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo04g00834 705 Pfam Poly(A) polymerase predicted RNA binding domain 358 416 IPR007010 GO:0003723|GO:0043631
Blo04g00834 705 Pfam Poly(A) polymerase predicted RNA binding domain 417 489 IPR007010 GO:0003723|GO:0043631
Blo04g00834 705 SUPERFAMILY PAP/Archaeal CCA-adding enzyme, C-terminal domain 357 482 IPR011068 GO:0003723|GO:0016779|GO:0031123
Blo04g00834 705 Gene3D - 11 353 - -
Blo04g00834 705 SUPERFAMILY Nucleotidyltransferase 11 204 IPR043519 -
Blo04g00834 705 Gene3D Poly(A) polymerase predicted RNA binding domain 357 472 - -
Blo04g00834 705 Pfam Nucleotidyltransferase domain 76 150 IPR002934 GO:0016779
Blo04g00834 705 Pfam Poly(A) polymerase central domain 11 355 IPR007012 GO:0004652|GO:0043631
Blo04g00834 705 SUPERFAMILY PAP/OAS1 substrate-binding domain 206 354 - -
Blo04g00834 705 Gene3D Beta Polymerase, domain 2 43 199 IPR043519 -
Blo04g00834 705 Coils Coil 635 655 - -
Blo04g00834 705 PANTHER POLY A POLYMERASE 4 659 - -
Blo04g00834 705 PANTHER POLY(A) POLYMERASE-LIKE PROTEIN 4 659 - -
Blo04g00834 705 CDD NT_PAP_TUTase 51 205 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo04g00834 K14376 PAP; poly(A) polymerase [EC:2.7.7.19] - tcc:18604224 1008.82
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo04g00834 Blo-Chr4:8953881 Blo17g00059 Blo-Chr17:421766 0 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g270 Blo04g00834 . . . . . . . Cmo13g01043 . . . . . . Cpe20g00138 . . . . . . . . . . . . . . . . . . . Lsi02g00215 Csa01g00698 Chy12g01415 Cme12g01849 . . . . . Bpe15g00533 Bma03g00902 . . . . Cma13g01005 . Car13g00840 Car18g00050 Cpe09g01126 . Bhi08g01267 Tan05g2221 . Lac10g0269 Hepe07g2369 . . Cla04g01067 Cam04g1110 Cec01g1624 Cco01g1671 Clacu04g1136 Cmu04g1119 Cre01g1420 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003713 1 3 1 1 1 1 2 1 1 1 1 1 2 1 1 1 1 2 2 1 1 1 1 1 1 1 1 5 4 4 46
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo04g00834 Blo_Chr04 FPKM 5.562249 5.275701 25.246391 27.996401 64.241211 66.050362 63.421032 8.223917 7.057712 6.818344